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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RKKVRPRLIAELARRVRALREQRNQPRDSQLYALDYETLTRPHSGRRLPVRAWADVRRESRLLQLLARLPLFGLGRLVTR
KSWLWQHDEPCYWRLTRVRPDYTAQNLDHGRAWGILTFKGKSEDTAREIEQVMYHDWRLVPKHEEEAFTAFTAKPEDRLN
SVPYPPLLRAMILAERQKNGDTSVQEPLLNLERTRMRPWDYPAKQETKGRAKGTPV

The query sequence (length=216) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pnt:0 216 216 1.0000 1.0000 1.0000 1.62e-158 7a5f:a6, 7a5g:a6, 7a5i:a6, 7a5k:a6, 3j9m:A0, 8k2a:Sj, 6nu2:A0, 6nu3:A0, 7og4:A0, 7pnu:0, 7pnv:0, 7pnw:0, 8xt0:Sj, 8xt2:Sj, 6zs9:A0, 6zsa:A0, 6zsb:A0, 6zsc:A0, 6zsd:A0, 6zse:A0, 6zsg:A0
2 8any:A0 215 215 0.8889 0.8930 0.8930 1.72e-134 8csp:0, 8csq:0, 8csr:0, 8css:0, 8cst:0, 8csu:0, 7l08:A0, 8oir:Aj, 8ois:Aj, 7p2e:0, 7pnx:0, 7pny:0, 7pnz:0, 7po0:0, 7po1:0, 7po2:0, 7po3:0, 7qi4:A0, 7qi5:A0, 7qi6:A0, 8qrk:0, 8qrl:0, 8qrm:0, 8qrn:0, 6rw4:0, 6rw5:0, 6vlz:A0, 6vmi:A0, 6zm5:A0, 6zm6:A0
3 3jd5:j 213 211 0.7963 0.8075 0.8152 7.50e-126 6neq:j, 6nf8:j
4 5aj3:j 213 212 0.8102 0.8216 0.8255 4.45e-118 5aj4:Aj, 6gaw:Aj, 6gaz:Aj, 7nqh:Aj, 7nql:Aj, 7nsi:Aj, 7nsj:Aj, 8oin:Aj, 8oip:Aj, 6ydp:Aj, 6ydw:Aj
5 7pkq:z 85 54 0.0926 0.2353 0.3704 0.12
6 6xyw:By 76 84 0.0833 0.2368 0.2143 0.37
7 6u5w:A 1435 80 0.1204 0.0181 0.3250 1.1
8 8a22:Bz 119 95 0.1296 0.2353 0.2947 1.3 8apn:Bz, 8apo:Bz
9 2vsq:A 1273 40 0.0648 0.0110 0.3500 1.7
10 4ob3:A 204 58 0.0833 0.0882 0.3103 1.8 9d6k:A, 8i6n:A, 1ire:A, 4ob0:A, 4ob1:A, 4ob2:A, 1ugp:A, 1ugr:A, 1ugs:A, 3vyh:A, 7w8l:A, 7w8m:A
11 7ane:t 226 108 0.1296 0.1239 0.2593 2.6
12 3qxe:A 201 58 0.0787 0.0846 0.2931 9.4 3qxe:C, 3qxe:E, 3qxe:G, 3qyg:A, 3qyg:C, 3qyg:E, 3qyg:G, 3qyh:A, 3qyh:C, 3qyh:E, 3qyh:G, 3qz5:A, 3qz5:C, 3qz5:E, 3qz5:G, 3qz9:A, 3qz9:C, 3qz9:E, 3qz9:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218