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BioLiP
>protein
RKIPLRKSVVSNEVIDKRDLLRIVKNKEGQVFIDPTGKANGRGAYIKLDNAEALEAKKKKVFNRSFSMEVEESFYDELIA
YVDHKVKRRELGLE

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1g2r:A 94 94 1.0000 1.0000 1.0000 9.63e-64
2 8adb:A 209 54 0.2021 0.0909 0.3519 0.13
3 7vyx:A 1211 64 0.1915 0.0149 0.2812 0.93 7vyx:B
4 4ojl:C 759 26 0.1383 0.0171 0.5000 1.7 4ojl:A, 4ojl:B, 4ojo:A, 4ojo:B, 4ojp:A, 4ojp:B, 4ojp:C
5 6yxx:E2 369 33 0.1170 0.0298 0.3333 2.3
6 6s1s:A 367 19 0.1064 0.0272 0.5263 2.6 4hef:A, 6i30:A, 4nk3:A, 4ooy:A, 3s1y:A, 3s22:A, 8sdr:A, 8sds:A, 8sdt:A, 8sdv:A, 6uqs:A, 6uqt:A, 6uqu:A, 6ur3:A, 4wyy:A, 2wzx:A, 2wzz:A, 4wz4:A, 4x68:A, 4x68:B
7 5xxu:H 177 55 0.1809 0.0960 0.3091 2.9
8 8dk3:A 455 36 0.1383 0.0286 0.3611 4.2 8dk3:B
9 3pfq:A 523 67 0.1915 0.0344 0.2687 4.5 1a25:A, 1a25:B, 2i0e:A, 2i0e:B
10 2ph5:A 459 79 0.2021 0.0414 0.2405 5.7
11 5zbk:A 182 17 0.0851 0.0440 0.4706 8.0
12 6kby:A 362 42 0.1596 0.0414 0.3571 8.6 6k9t:A, 6ka5:A, 6m5p:A, 6m5q:A
13 5jrk:A 695 40 0.1277 0.0173 0.3000 9.3 5jrk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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