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BioLiP
>protein
RKIPAGPYSVSVEPLRDGATNEVSIVTPPISSEGVQEYLSLAPVFFMALAIFTSGFAIEVLRFFPDTRYW

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8jw0:j 70 70 1.0000 1.0000 1.0000 2.45e-46
2 8jze:j 98 56 0.4000 0.2857 0.5000 8.60e-14 8jzf:j
3 8jjr:j 99 56 0.3714 0.2626 0.4643 1.95e-13
4 6l4u:J 41 34 0.2571 0.4390 0.5294 4.65e-06
5 6vpv:J 39 37 0.2429 0.4359 0.4595 1.22e-05 6vpv:j, 6vpv:8
6 6qph:J 41 29 0.2714 0.4634 0.6552 1.23e-05 6rhz:J, 6sl5:J, 6yxr:J
7 4l6v:F 125 37 0.2429 0.1360 0.4595 5.53e-05 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
8 8wm6:J 42 33 0.2571 0.4286 0.5455 1.32e-04 8wmj:J, 8wmv:J, 8wmw:J, 7y7b:J, 7y8a:J
9 7y5e:JN 38 34 0.2286 0.4211 0.4706 7.89e-04 7y5e:J2, 7y7a:J7, 7y7a:Jo
10 7blz:J 38 37 0.2143 0.3947 0.4054 0.002 6fos:J, 8wey:J, 5zgb:J, 5zgh:J
11 8htu:J 41 34 0.2286 0.3902 0.4706 0.006 7ksq:J, 7kux:J, 6l35:J, 7xqp:J
12 6kif:J 41 37 0.2143 0.3659 0.4054 0.007 6kif:T, 6kif:l, 6kig:J, 6kig:T, 6kig:l
13 8cmo:J 40 34 0.2143 0.3750 0.4412 0.017
14 7d0j:J 41 34 0.2143 0.3659 0.4412 0.018 7bgi:J, 7blx:J, 7dz7:J, 7dz8:J, 8h2u:J, 6ijj:J, 6ijo:J, 6jo5:J, 6jo6:J, 7r3k:J, 7wyi:J, 7wzn:J, 7zq9:J, 7zqc:J, 7zqd:J, 7zqd:J2
15 7coy:aJ 35 34 0.1857 0.3714 0.3824 0.021 7coy:bJ, 7coy:cJ
16 7dr0:J 37 31 0.2143 0.4054 0.4839 0.036 7dr1:J, 7dr2:aJ, 7dr2:bJ, 7dr2:cJ, 7dr2:dJ
17 7a4p:J 41 29 0.2000 0.3415 0.4828 0.041 6zzx:J, 6zzy:J
18 5l8r:J 42 38 0.2571 0.4286 0.4737 0.10 7dkz:J, 6ly5:j, 4rku:J, 4xk8:J, 4xk8:j, 4y28:J, 6yac:J, 6yez:J, 6zoo:J, 6zxs:J
19 7yca:J 41 34 0.2143 0.3659 0.4412 0.15
20 6igz:J 41 34 0.2143 0.3659 0.4412 0.15
21 8bcv:J 43 40 0.2571 0.4186 0.4500 0.24 7ew6:J, 7ewk:J, 7f9o:J, 7f9o:m, 8j6z:J, 8j7a:J, 8j7b:J, 3lw5:J, 2o01:J, 7wfd:AJ, 7wfe:BJ, 7wg5:AJ, 7wg5:BJ, 8wgh:J, 2wsc:J, 2wse:J, 2wsf:J, 5zji:J
22 4fe1:J 41 32 0.2000 0.3415 0.4375 0.35 7fix:J1, 7fix:J2, 7fix:J3, 1jb0:J, 6k33:aJ, 6k33:bJ, 6k33:cJ, 7m75:J, 7m76:J, 7m78:J, 3pcq:J, 6pfy:J, 6pfy:S, 6pfy:f, 6pgk:J, 6pgk:S, 6pgk:f, 6tra:J, 6trc:J, 6trc:j, 6trc:8, 6trd:J, 6trd:j, 6trd:8, 5zf0:J1, 5zf0:J2, 5zf0:J3, 5zf0:J4, 5zf0:J6, 5zf0:J5
23 6k61:J 45 39 0.2000 0.3111 0.3590 1.2 6jeo:aJ, 6jeo:bJ, 6jeo:cJ, 6jeo:dJ, 6k61:j, 6tcl:J1, 6tcl:J2, 6tcl:J, 6tcl:JJ, 7y3f:J
24 8smr:G 312 55 0.2143 0.0481 0.2727 2.8
25 5c8g:A 122 28 0.1714 0.0984 0.4286 3.2 5c8g:B
26 1r9d:A 786 51 0.1857 0.0165 0.2549 5.7 1r9d:B
27 8hi5:A 647 43 0.2000 0.0216 0.3256 7.5
28 8snh:G 304 40 0.1714 0.0395 0.3000 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218