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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RKIILMGLRRSGKSSIQKVVFYKSVWDFPGQVDVFDAAFDFESIFTQVGALIFVIDAQDDYLDALARLHVTVARVVTINP
NICIEVFIHKVDGLSDEFKIDTQRDIQQRTQDELADIGLENVPISFHLTSIFDHSIFEAFSRVIQKLIPQLPTLENLLNI
FCSNSLVEKAYLFDVLSKIYVATDSSPVDVQSYEICSDFIDVILDIGSIYGRSSQLKPGHSPEILDETSSVIRLSNDLVL
FLREMNQYLALICIVRADNFEKSGLIEYNVQCLQTAIQSIFSPRT

The query sequence (length=285) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fw5:E 285 285 1.0000 1.0000 1.0000 0.0
2 6ulg:G 310 309 0.6281 0.5774 0.5793 3.83e-128 8dhb:A, 3llu:A, 6nzd:G, 2q3f:A, 2q3f:B, 6s6a:C, 6s6a:D, 6s6d:D, 6sb0:D, 6sb0:J, 6sb2:D, 6sb2:J, 7t3b:E, 7t3c:E, 6u62:C, 7ux2:C, 7ux2:J, 7uxc:E, 7uxc:L, 7uxh:G, 7uxh:N, 7uxh:W, 7uxh:d, 6wj2:G, 6wj3:G
3 6s6d:C 284 285 0.5930 0.5951 0.5930 2.09e-119
4 4arz:B 304 308 0.4737 0.4441 0.4383 3.57e-88 6jwp:B, 3r7w:B, 3r7w:D
5 4arz:A 291 296 0.2561 0.2509 0.2466 5.25e-10 6jwp:A, 6jwp:F, 3r7w:A, 3r7w:C
6 8fw5:D 301 238 0.2000 0.1894 0.2395 3.16e-09
7 6ces:A 300 193 0.1684 0.1600 0.2487 4.76e-08 8dhb:B, 6s6a:A, 6s6a:B, 6s6d:A, 6s6d:B, 6sb0:C, 6sb0:I, 6sb2:C, 6sb2:I, 7t3a:K, 7t3b:D, 7t3c:D, 7t3c:K, 6u62:B, 6ulg:F, 7ux2:B, 7ux2:I, 7uxc:D, 7uxc:K, 7uxh:F, 7uxh:M, 7uxh:V, 7uxh:c, 6wj2:F, 6wj3:F
8 6nzd:F 227 162 0.1439 0.1806 0.2531 1.52e-05
9 4ax3:D 457 164 0.1368 0.0853 0.2378 0.69 4ax3:A, 4ax3:B, 4ax3:C, 6f1q:A, 6fja:A, 5obo:A, 5ocb:A, 5ocf:A, 8qgf:A, 6qpt:A, 6qpt:B, 6qpt:C, 6qpt:D, 6qpt:E, 6qpt:F, 6qpu:A, 6qpu:B, 6qpu:C, 6qpu:D, 6qpu:E, 6qpu:F, 6qpv:A, 6qpv:I, 6qpx:A, 6qpx:I, 6qpz:A, 6qpz:I, 6qq0:A, 6qq1:A, 6qq2:A, 7qq2:A, 7r2u:A, 2yqb:A, 3zbm:A, 3ziy:A
10 5de3:A 166 81 0.0737 0.1265 0.2593 1.7 5di3:A
11 7np8:B 620 66 0.0596 0.0274 0.2576 1.9 7np8:A, 7np8:C, 7np8:D
12 1ccr:A 111 51 0.0491 0.1261 0.2745 3.6
13 8sbm:B 126 86 0.0877 0.1984 0.2907 4.0 8sbm:A, 3zxo:A, 3zxo:B
14 4zi2:A 185 81 0.0772 0.1189 0.2716 4.4 3bh6:A, 3bh7:A, 1fzq:A, 4goj:A, 4goj:B, 7ok7:A, 7ok7:B, 7ok7:C, 7ok7:D, 7ok7:E, 7ok7:F, 4zi2:B, 4zi3:A, 4zi3:B
15 1w6s:D 72 57 0.0561 0.2222 0.2807 6.0
16 6a8d:A 181 83 0.0737 0.1160 0.2530 8.4
17 7rll:B 177 99 0.0912 0.1469 0.2626 8.7 7rll:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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