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BioLiP
>protein
RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMI
KDIGAAWVILGNSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLA
YEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFVDI
INAKH

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ssg:A 247 245 0.9796 0.9717 0.9796 7.20e-179 1ssg:B, 1su5:A, 1su5:B, 1sw0:A, 1sw0:B, 1sw3:A, 1sw3:B, 1sw7:A, 1sw7:B, 1tpb:1, 1tpb:2, 1tpc:1, 1tpc:2, 1tph:1, 1tph:2, 1tpu:A, 1tpu:B, 1tpv:A, 1tpv:B, 1tpw:A, 1tpw:B
2 1hti:B 248 245 0.8898 0.8790 0.8898 2.27e-161 4owg:A, 4owg:B, 4poc:B, 4pod:B, 1r2r:B, 7rde:B, 7t0q:A, 6up5:B, 6upf:A, 6upf:B, 7uxv:A, 7uxv:B
3 6nee:B 252 249 0.7061 0.6865 0.6948 2.52e-121 6nee:A
4 5eyw:A 244 244 0.6612 0.6639 0.6639 8.46e-121 5eyw:B
5 8w06:B 251 247 0.6776 0.6614 0.6721 1.12e-118 8v09:A, 8v0a:B, 8w06:A, 8w06:C, 8w06:D, 8w06:E, 8w06:F, 8w06:G, 8w06:H
6 5zfx:B 248 246 0.6408 0.6331 0.6382 6.10e-116
7 6ooi:C 255 248 0.6612 0.6353 0.6532 8.48e-116 6ooi:A, 6ooi:B, 6ooi:D, 6ooi:E, 6ooi:F, 6ooi:G, 6ooi:H
8 6oog:A 252 248 0.6163 0.5992 0.6089 5.78e-106
9 4ff7:A 247 246 0.5224 0.5182 0.5203 5.18e-87 4ff7:B, 7tim:A, 7tim:B, 2ypi:A, 2ypi:B, 3ypi:A, 3ypi:B
10 1ci1:B 249 241 0.4980 0.4900 0.5062 5.22e-81
11 1amk:A 250 241 0.5061 0.4960 0.5145 3.51e-79 7abx:A, 7az3:A, 7az4:A, 7az9:A, 7aza:A, 1if2:A, 1n55:A, 1qds:A, 2vxn:A, 2y61:A, 2y62:A, 2y63:A
12 1ag1:T 249 243 0.5184 0.5100 0.5226 3.92e-76 5i3h:B, 5i3i:A, 5i3i:B, 5i3i:C, 5i3i:D, 5i3k:B, 5i3k:C, 5i3k:D, 1iig:B, 2j27:A, 2j27:B, 1kv5:A, 1kv5:B, 4tim:B, 6tim:B, 1trd:B, 1tsi:A, 2v2c:A
13 2y6z:A 256 244 0.5061 0.4844 0.5082 4.24e-70 1ml1:A, 1ml1:C, 1ml1:E, 1ml1:G, 1ml1:I, 1ml1:K, 4pc8:A, 1tti:A, 1ttj:A, 2v2h:A, 2v2h:B, 2v2h:C, 2vek:B, 2vel:A, 2vel:B, 2vem:A, 2vem:B, 2wsr:A, 2x1r:A, 2x1r:B, 2x1s:A, 2x1s:B, 2x1t:B
14 5gzp:A 246 244 0.4286 0.4268 0.4303 8.13e-68 5gv4:A, 5gzp:B, 1lyx:A, 1lzo:B, 1lzo:D, 1m7p:A, 1m7p:B, 1o5x:A, 1o5x:B, 3pvf:A, 1woa:A, 1woa:B, 1woa:C, 1woa:D, 1wob:A, 1wob:B, 1wob:C, 1wob:D
15 4bi7:A 256 247 0.4490 0.4297 0.4453 1.38e-66 4bi6:A, 3pf3:A
16 4y96:A 250 252 0.4816 0.4720 0.4683 1.31e-64 4y96:B
17 4mva:A 255 246 0.4531 0.4353 0.4512 4.03e-58 4mva:B
18 1btm:A 251 249 0.4327 0.4223 0.4257 6.15e-58 1btm:B, 2btm:A, 2btm:B
19 3uwv:A 255 248 0.4286 0.4118 0.4234 6.77e-55 3uwu:A, 3uwu:B, 3uwv:B, 3uww:A, 3uww:B, 3uwz:A, 3uwz:B
20 1aw1:A 255 240 0.4082 0.3922 0.4167 1.04e-51 1aw1:B, 1aw1:D, 1aw1:E, 1aw1:G, 1aw1:H, 1aw1:J, 1aw1:K
21 6bve:A 242 249 0.4082 0.4132 0.4016 2.88e-48 6bve:B
22 4y90:A 244 240 0.4041 0.4057 0.4125 1.36e-43 4y90:B, 4y90:C, 4y90:D
23 3tao:A 256 247 0.3837 0.3672 0.3806 1.39e-39
24 2jgq:A 231 176 0.2531 0.2684 0.3523 1.32e-26 2jgq:B
25 5csr:C 220 57 0.0857 0.0955 0.3684 0.013 5csr:A, 5csr:B, 5csr:D, 5css:A, 5css:B, 5css:C, 5css:D
26 2rfb:A 338 84 0.1061 0.0769 0.3095 0.033 2rfb:B, 2rfb:C, 2rfc:A, 2rfc:B, 2rfc:C, 2rfc:D
27 1w0m:A 225 199 0.1918 0.2089 0.2362 0.58 1w0m:B, 1w0m:C, 1w0m:D, 1w0m:E, 1w0m:F, 1w0m:G, 1w0m:H
28 6hqg:B 364 85 0.0939 0.0632 0.2706 0.95 6hqg:A, 6hqg:C, 6hqg:D
29 1hr6:D 443 75 0.0898 0.0497 0.2933 0.95 1hr6:B, 1hr6:F, 1hr6:H, 1hr7:B, 1hr7:D, 1hr7:F, 1hr7:H, 1hr8:B, 1hr8:D, 1hr8:F, 1hr8:H, 1hr9:B, 1hr9:D, 1hr9:F, 1hr9:H
30 2qpx:A 376 75 0.0857 0.0559 0.2800 3.5
31 2ze3:A 275 58 0.0816 0.0727 0.3448 4.9
32 8gqm:A 377 41 0.0449 0.0292 0.2683 6.6
33 1psz:A 286 58 0.0776 0.0664 0.3276 7.8 4uto:A, 4uto:B, 3zka:A, 3zka:B, 3ztt:A, 3ztt:B, 3ztt:C, 3ztt:D
34 8c54:A 482 53 0.0694 0.0353 0.3208 8.1 8c54:B, 8c54:C, 8c54:D
35 2ood:A 463 69 0.0571 0.0302 0.2029 8.2
36 3acl:A 288 51 0.0653 0.0556 0.3137 8.8 4ero:A, 4ewa:A, 4ewd:A, 4ewe:A, 4gul:A, 6h1h:A, 6h1i:A, 4hlt:A, 1j1l:A, 5jct:A, 6n0j:A, 6n0k:A
37 4ubs:A 393 50 0.0653 0.0407 0.3200 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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