Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RKDYAKLANYDESKVPQYTLPSVLMCHDGEMVQTKEQWEQKRRPEILNLFTTYMFGKAPVLKHKLPCTVSRINEKALNGR
ATRKEITIQLTDDPQGPHIDLQLYLPNHVSGKIPVFLGISFMPNYTIYDDPDLSVSFRGSMDKSWQLDKILEHGYGLATF
CYNDVDPDFDDDFQNGVHPYYYEKGQNFPDPDQWGSIAAWAWGMSRAMDYLETDKKVDAKKVAVIGHSRLGKTAVWAGAS
DPRFALVISGNSGCCGVAISRRCFGETVEAMNVRFPHWFCGNYKQFNDREKYLPFDQHELVALIAPRPIYIASAEEDNWS
DQKGEFLGGKGAEPVYALYGLGGIGCEEMPPVDTPYMNGPIAYHNRKGPHAVLPYDWEQFLRFADKYFKN

The query sequence (length=390) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qcl:A 390 390 1.0000 1.0000 1.0000 0.0 8qcl:B, 8qef:B
2 6syu:A 402 396 0.4564 0.4428 0.4495 3.05e-121 6grw:A, 6gs0:A, 6syr:A, 6syv:A, 6sz0:A, 6sz4:A, 6t0e:A, 6t0e:B, 6t0i:A
3 7b7h:A 370 376 0.4487 0.4730 0.4654 1.60e-119 6szo:A
4 8tru:A 378 340 0.2308 0.2381 0.2647 8.75e-24
5 4g4j:A 369 313 0.2128 0.2249 0.2652 3.90e-14
6 6ru1:B 386 382 0.2359 0.2383 0.2408 5.82e-14 6ru2:A, 6ru2:B, 6rv7:B, 6rv8:B, 6rv8:A, 6rv9:B
7 1kyw:C 361 146 0.0923 0.0997 0.2466 0.23 1kyw:F, 1kyz:A, 1kyz:C, 1kyz:E
8 3f98:A 377 57 0.0462 0.0477 0.3158 0.60 3f97:A, 3f97:B, 3f98:B, 3f98:C, 3f9c:A, 3f9c:B, 5i8p:A, 5i8p:B, 5i9i:A, 5i9i:B, 5jad:A, 5jah:A, 5jal:A, 5jan:A, 5jao:A, 5jap:A, 5jar:A, 5jas:A, 5jat:A, 5jau:A, 5lp1:A, 5lyy:A, 5lz2:A, 5lz4:A, 5lz5:A, 5lz7:A, 5lz8:A, 5lz9:A, 6m06:A, 6m06:B, 6m07:A, 6m07:B, 6m08:B, 5ye7:B, 5ye7:A, 5ye8:B, 5ye8:A, 5ye9:A, 5ye9:B, 5yea:A, 5yea:B
9 7c4d:A 261 38 0.0436 0.0651 0.4474 0.62
10 1gwi:A 402 74 0.0564 0.0547 0.2973 2.6 1gwi:B
11 7zm7:A 711 54 0.0462 0.0253 0.3333 3.4 7zmb:A, 7zmg:A
12 8ian:A 270 54 0.0436 0.0630 0.3148 3.8 8ian:B
13 6aid:A 261 51 0.0385 0.0575 0.2941 5.2 3wyn:A, 3wyn:B
14 4pex:B 551 53 0.0410 0.0290 0.3019 7.1 4pey:A, 4pez:A, 4pf0:A, 4pf0:B, 4tyv:B, 4tz1:A, 4tz3:A, 4tz5:A, 4tz5:B
15 6jlu:W 51 14 0.0179 0.1373 0.5000 9.0 8j5k:W, 8j5k:w, 6jlu:w

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218