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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RIVGQYYDDKTAKLVRKYGPGPRIHYHVGYYPSSEAPRHTRDVTPDAFRRSIRLHQEGLLRYAAKIWGAEHRLSGRILDV
GCGLGGGSLFWAQEYGADVTAVTNAPEHAPIVEGFARECGVGGRVRTLVCDAMHLPLDGGPYDAAVAIESSGYFDRPVWF
ERLAHVLRPGGSVCIEEVFTTRPHGADVWAEYFYTKPATVLDYAEAAKAAGFELVDDVDATSETLPFWEESTAWTKAVLD
SDSTLSAVDRRQLRISLMANQALGAEWQAGGLRLGFLRFERK

The query sequence (length=282) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7fbo:A 282 282 1.0000 1.0000 1.0000 0.0 7fbh:B, 7fbh:C, 7fbo:B, 7fbo:C
2 4pne:B 272 173 0.2057 0.2132 0.3353 1.99e-13 4pne:A
3 4f86:A 275 158 0.1702 0.1745 0.3038 6.99e-12 4f84:A, 4f86:B, 4f86:C, 4f86:E, 4f86:F, 4f86:H, 4f86:I, 4f86:J, 4f86:K, 4f86:L
4 5gm2:B 282 226 0.2163 0.2163 0.2699 8.50e-11 5gm1:A, 5gm1:B, 5gm1:C, 5gm1:D, 5gm1:E, 5gm1:F, 5gm1:G, 5gm1:H, 5gm1:I, 5gm1:J, 5gm1:K, 5gm1:L, 5gm1:M, 5gm1:N, 5gm1:O, 5gm1:P, 5gm1:Q, 5gm1:R, 5gm2:A, 5gm2:C, 5gm2:D, 5gm2:E, 5gm2:F, 5gm2:G, 5gm2:H, 5gm2:I, 5gm2:J, 5gm2:L, 5gm2:M, 5gm2:N, 5gm2:O, 5gm2:P, 5gm2:Q, 5gm2:R
5 3bus:A 251 160 0.1702 0.1912 0.3000 1.15e-10 3bus:B
6 3vc1:D 288 158 0.1596 0.1562 0.2848 2.11e-10 4f86:D, 4f86:G, 3vc1:A, 3vc1:B, 3vc1:C, 3vc1:E, 3vc1:F, 3vc1:G, 3vc1:H, 3vc1:I, 3vc1:J, 3vc1:K, 3vc1:L, 3vc2:A, 3vc2:B, 3vc2:C, 3vc2:D, 3vc2:E, 3vc2:F, 3vc2:G, 3vc2:H, 3vc2:I, 3vc2:J, 3vc2:K, 3vc2:L
7 6uv6:C 264 109 0.1348 0.1439 0.3486 9.88e-10 6uv6:A, 6uv6:B
8 5gm2:K 267 151 0.1596 0.1685 0.2980 1.09e-07
9 5wp5:A 463 202 0.1738 0.1058 0.2426 1.59e-07 5wp5:B
10 7v6h:A 267 154 0.1348 0.1423 0.2468 2.48e-07 7v6h:B
11 1ve3:B 226 143 0.1312 0.1637 0.2587 2.98e-07 1ve3:A
12 5wp4:A 485 156 0.1418 0.0825 0.2564 1.30e-06
13 4krh:A 430 144 0.1418 0.0930 0.2778 1.41e-05 4krh:B, 4kri:A, 4kri:B, 4kri:C
14 4mwz:B 265 155 0.1170 0.1245 0.2129 1.68e-04 4iv0:A, 4iv0:B, 4mwz:A
15 4ine:A 431 101 0.0993 0.0650 0.2772 3.74e-04 4ine:B
16 3sxj:A 245 123 0.1206 0.1388 0.2764 7.44e-04 3sxj:B, 3t0i:A, 3t0i:B
17 2avn:A 247 123 0.1383 0.1579 0.3171 7.85e-04 2avn:B
18 4iv8:A 245 156 0.1241 0.1429 0.2244 8.08e-04 4iv8:B
19 9fcx:A 214 146 0.1596 0.2103 0.3082 0.001 9fcd:A, 9fcl:A, 9fcq:A, 9fcs:A, 9fcs:B, 9fcu:A, 9fcu:B, 9fcu:C, 9fcu:D, 9fcx:B, 9fcy:A, 9fcy:B, 9fcy:C, 9fcy:D, 9fd3:A, 9g0k:A, 9g0k:B
20 7qos:A 352 147 0.1099 0.0881 0.2109 0.001 7qos:B
21 6ecv:A 286 214 0.1702 0.1678 0.2243 0.001 6ecu:A, 6ecu:B, 6ecv:B, 6ecw:A, 6ecw:B
22 3uj7:A 259 149 0.1135 0.1236 0.2148 0.002 4fgz:A, 4fgz:B, 4r6w:A, 4r6w:B, 4r6x:A, 4r6x:B, 3uj6:A, 3uj7:B, 3uj8:A, 3uj9:A, 3uja:A, 3ujb:A, 3ujb:B, 3ujc:A, 3ujd:A
23 5z9o:A 373 118 0.1064 0.0804 0.2542 0.004 5z9o:B
24 3t7s:A 246 143 0.1383 0.1585 0.2727 0.017 3t7s:B, 3t7s:C, 3t7s:D, 3t7t:A, 3t7t:B, 3t7t:C, 3t7t:D
25 4ymg:B 239 93 0.1099 0.1297 0.3333 0.038 4ymg:A, 4ymh:A, 4ymh:B, 4ymh:C, 4ymh:D
26 6gkv:A 351 42 0.0638 0.0513 0.4286 0.042 6gkv:B, 6gky:A, 6gky:B, 6gkz:A, 6gkz:B, 6gkz:C, 6gkz:D
27 6bqc:A 348 106 0.1028 0.0833 0.2736 0.046
28 1x1a:A 337 73 0.0709 0.0593 0.2740 0.095 1x1b:A, 1x1c:A, 1x1d:A
29 5kok:A 348 37 0.0567 0.0460 0.4324 0.11 5koc:A, 5koc:B, 5kok:B, 5kpc:A, 5kpc:B, 5kpg:A, 5kpg:B
30 2glu:A 234 118 0.1206 0.1453 0.2881 0.12 2glu:B
31 6p3o:A 341 87 0.0851 0.0704 0.2759 0.16 6p3m:A, 6p3n:A
32 3kkz:A 256 67 0.0709 0.0781 0.2985 0.22 3kkz:B
33 3dlc:A 219 126 0.0922 0.1187 0.2063 0.25
34 7wdq:A 336 153 0.1277 0.1071 0.2353 0.29 7wdq:B, 7wdq:C, 7wdw:A, 7wdw:B, 7wdw:C, 7wdw:D
35 4qtu:B 191 206 0.1631 0.2408 0.2233 0.34 4qtu:D
36 5ti8:B 384 75 0.0957 0.0703 0.3600 0.34
37 3eld:A 277 38 0.0674 0.0686 0.5000 0.41 3elu:A, 3elw:A, 3ely:A, 3emb:A, 3emd:A
38 5dpl:A 520 38 0.0496 0.0269 0.3684 0.46 5doo:A, 5dpl:B
39 5bp7:A 249 114 0.1241 0.1406 0.3070 0.47 5bp7:B, 5bp7:C
40 6uak:A 297 105 0.1135 0.1077 0.3048 0.54
41 3g5t:A 299 136 0.1206 0.1137 0.2500 0.60
42 4kdr:A 208 100 0.1099 0.1490 0.3100 0.68 5dpm:A
43 2zfu:A 212 53 0.0638 0.0849 0.3396 0.83 2zfu:B
44 6mro:A 194 41 0.0603 0.0876 0.4146 1.0 8gdu:A
45 2ha8:A 159 63 0.0638 0.1132 0.2857 1.1 2ha8:B
46 1kpg:A 285 106 0.0993 0.0982 0.2642 1.1 1kpg:B, 1kpg:C, 1kpg:D, 1kph:A, 1kph:B, 1kph:C, 1kph:D
47 9fce:B 209 145 0.1418 0.1914 0.2759 1.2 9fce:A
48 7wzg:B 243 38 0.0709 0.0823 0.5263 1.3 7wzg:A, 7wzg:C, 7wzg:D, 7wzg:E, 7wzg:F
49 7esz:C 680 52 0.0638 0.0265 0.3462 1.6 7esz:A
50 8pjd:A 347 84 0.0851 0.0692 0.2857 1.8 8bva:A, 8c1j:A, 5ful:A, 5fwa:A, 5fwd:A, 5jmq:A
51 8c9v:A 187 111 0.0993 0.1497 0.2523 1.9
52 5uow:B 795 110 0.1028 0.0365 0.2636 2.4
53 6o65:B 294 44 0.0638 0.0612 0.4091 2.4 6o65:A, 6o65:C, 6o65:D, 6o65:E, 6o65:F, 6o65:G, 6o65:H
54 5epe:A 248 117 0.1206 0.1371 0.2906 2.5
55 1tpy:A 285 184 0.1525 0.1509 0.2337 3.0
56 6emm:A 268 223 0.1879 0.1978 0.2377 4.2 5en4:A, 6ffb:A, 6g4l:A, 6gbt:A, 6gtb:A, 6gtu:A, 6h0m:A, 6hno:A, 5hs6:A, 5icm:A, 5js6:A, 5jsf:A, 5l7t:A, 5l7w:A, 5l7y:A, 5o42:A, 5o43:A, 5o6o:A, 5o6x:A, 5o6z:A, 5o72:A, 5o7c:A, 6qck:A, 6zde:A, 6zdi:A, 6zr6:A, 6zra:A, 6zt2:A
57 6h3o:F 650 79 0.0851 0.0369 0.3038 4.4 6h3g:A, 6h3g:B, 6h3g:C, 6h3g:F, 6h3g:D, 6h3g:E, 6h3g:G, 6h3g:H, 6h3o:A, 6h3o:B, 6h3o:C, 6h3o:D, 6h3o:E, 6h3o:G, 6h3o:H, 8il5:A
58 8dqv:A 513 38 0.0390 0.0214 0.2895 5.4 8dqv:C, 7utd:A, 7utd:C, 7utd:E, 7utd:G, 7utd:I, 7utd:K, 7utd:M, 7utd:O, 7uur:C, 7uur:F, 7uus:A, 7uus:C, 7uus:E, 7uus:G, 7uus:I, 7uus:K, 7uus:M, 7uus:O
59 1l3i:A 186 102 0.0993 0.1505 0.2745 5.6 1l3i:B, 1l3i:C, 1l3i:D, 1l3i:E, 1l3i:F
60 2oxt:A 265 48 0.0709 0.0755 0.4167 6.0 2oxt:B, 2oxt:C, 2oxt:D
61 7lxi:A 279 27 0.0390 0.0394 0.4074 6.3 7mcj:A, 7mcj:B
62 6s21:A 486 32 0.0461 0.0267 0.4062 7.4 6s21:B, 6s21:C
63 2xva:A 199 27 0.0496 0.0704 0.5185 8.5 2xva:B, 2xva:C, 2xva:D, 2xvm:A, 2xvm:B
64 5ccv:A 849 36 0.0532 0.0177 0.4167 9.0 6h80:A, 6h9r:A, 6izz:A
65 8gzp:A 854 36 0.0532 0.0176 0.4167 9.1 4c11:A, 5ccv:B, 5ccv:C, 5ccv:D, 5ccv:F, 5ccv:G, 5dto:A, 5f3t:A, 5f3z:A, 5f41:A, 8gzq:A, 4hhj:A, 5hmw:A, 5hmx:A, 5hmy:A, 5hmz:A, 5hn0:A, 5i3p:A, 5i3q:A, 5iq6:A, 6j00:A, 2j7u:A, 2j7w:A, 5jjr:A, 5jjs:A, 4v0q:A, 4v0r:A, 6xd0:A
66 8gzr:A 880 36 0.0532 0.0170 0.4167 9.8 8bcr:A, 8bcr:B, 4c11:B, 5ccv:E, 4ctj:A, 4ctj:C, 4ctk:A, 4ctk:C, 5cuq:A, 5cuq:B, 5e9q:A, 5e9q:C, 5ec8:A, 5ec8:C, 5ehg:A, 5ehg:C, 5ehi:A, 5ehi:C, 5eif:A, 5eif:C, 5eiw:A, 5eiw:C, 5ekx:A, 5ekx:B, 3p8z:A, 3p8z:C, 3p97:A, 3p97:C, 4r8s:A, 4r8s:B, 3vws:A, 2xbm:B, 2xbm:A, 2xbm:C, 2xbm:D, 6xd1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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