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BioLiP
>protein
RIRLGKVVPSSIRIVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELFATNFGGRLKTRQDFVLKGQQNNWKRYN
PTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPIDEYIKKILTVNQ
VFEILSLWLEYRDWEKAFMEVIPKR

The query sequence (length=185) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jwf:A 187 187 0.9892 0.9786 0.9786 6.72e-135 4jwf:B, 4jwh:A, 4jwh:B
2 4fmw:A 178 179 0.4378 0.4551 0.4525 4.71e-53 4fmw:B
3 4jwj:A 193 181 0.4324 0.4145 0.4420 2.02e-45 4jwj:B
4 8cbk:F 343 179 0.2865 0.1545 0.2961 7.32e-18 8cbl:F, 8cbm:F, 8cbo:E, 5nfj:A, 5nfj:B, 5nfj:C, 7onu:F
5 5b3r:B 219 73 0.1351 0.1142 0.3425 0.22 5b3r:A
6 4oge:A 977 82 0.1135 0.0215 0.2561 0.24 4ogc:A
7 1p77:A 265 106 0.1514 0.1057 0.2642 1.6
8 6r79:A 220 74 0.1243 0.1045 0.3108 2.8 6r73:A, 6r73:B, 6r78:A, 6r78:B, 6r79:D, 6r79:B, 6r79:C, 6rzr:A, 6rzr:B, 6rzs:A, 6rzs:B, 6s0h:A, 6s0h:B, 4ubq:A, 6yi4:AAA, 6yi4:BBB, 6yi4:CCC
9 7v6l:B 347 37 0.0649 0.0346 0.3243 3.3 7v6j:A, 7v6j:B, 7v6l:A
10 6brl:A 502 46 0.0919 0.0339 0.3696 3.5
11 6d4g:B 187 68 0.0973 0.0963 0.2647 4.7
12 2rpr:A 87 30 0.0486 0.1034 0.3000 5.5
13 3rgq:A 156 38 0.0649 0.0769 0.3158 5.6
14 6vtj:A 472 58 0.1027 0.0403 0.3276 6.0
15 7rer:A 389 54 0.0811 0.0386 0.2778 7.4 7rer:D, 7rer:C, 7rer:B, 7rer:E, 7rer:H, 7rer:G, 7rer:F, 8u8y:A, 8u8y:B, 8u8y:C, 8u8y:D, 8u8y:E, 8u8y:F, 8u8y:G, 8u8y:H
16 6emu:A 170 53 0.0973 0.1059 0.3396 7.7 6emu:B, 6emu:C, 6emv:A, 6emv:B, 6emv:C
17 3coq:A 89 38 0.0865 0.1798 0.4211 8.2 3coq:B, 1d66:A, 1d66:B, 7uik:T, 7uik:U, 7uio:GA, 7uio:GB
18 2ivn:A 325 60 0.0595 0.0338 0.1833 8.6 2ivo:A, 2ivo:B, 2ivo:C, 2ivp:A
19 7rfi:A 422 54 0.0811 0.0355 0.2778 8.6 7rfi:B, 7rfi:C, 7rfi:D, 7rfi:E, 7rfi:F, 7rfi:G, 7rfi:H, 7rgl:A, 7rgl:B, 7rgl:C, 7rgl:D, 7rgl:E, 7rgl:F, 7rgl:G, 7rgl:H
20 8p5d:LN0 203 29 0.0649 0.0591 0.4138 9.9 8p60:LN0, 8p60:KN0, 7qca:LN0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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