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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RIPPQSIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVS
YLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTREDEIDVLLDEADRKIMEVSQRKHAFKNIKDILVQT
YDNIEMLHNRDGITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMR
MLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGR
SKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNKDSENKN
IIEIIIAKQRNGPVGTVQLAFIKEYNKFVNL

The query sequence (length=431) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4esv:C 434 434 1.0000 0.9931 0.9931 0.0 4esv:A, 4esv:B, 4esv:D, 4esv:E, 4esv:F, 4esv:G, 4esv:H, 4esv:I, 4esv:J, 4esv:K, 4esv:L, 2vye:A, 2vye:B
2 8a3v:A 450 439 0.4756 0.4556 0.4670 1.40e-138 8a3v:B, 6t66:A, 6t66:B, 6t66:C, 6t66:D, 6t66:E, 6t66:F
3 6bbm:D 455 443 0.4803 0.4549 0.4673 5.77e-137 6bbm:F, 6bbm:B, 6bbm:C, 6bbm:E, 6qel:A, 6qel:B, 6qel:C, 6qel:D, 6qel:E, 6qel:F, 6qem:A, 6qem:B, 6qem:C, 6qem:D, 6qem:E, 6qem:F, 7t20:B, 7t20:C, 7t20:E, 7t20:F, 7t20:D, 7t21:A, 7t21:B, 7t21:C, 7t21:D, 7t21:E, 7t21:F, 7t22:A, 7t22:B, 7t22:C, 7t22:D, 7t22:E, 7t22:F, 7t23:A, 7t23:B, 7t23:C, 7t23:D, 7t23:E, 7t23:F
4 6bbm:A 405 435 0.4548 0.4840 0.4506 5.48e-127
5 4nmn:A 425 430 0.4084 0.4141 0.4093 3.94e-109 4nmn:B
6 4zc0:B 434 445 0.3573 0.3548 0.3461 5.94e-76 3gxv:A
7 6n9x:B 500 350 0.1833 0.1580 0.2257 3.49e-07 1e0j:A, 1e0j:B, 1e0j:C, 1e0j:D, 1e0j:E, 1e0j:F, 6n7i:A, 6n7i:B, 6n7i:C, 6n7i:D, 6n7i:E, 6n7n:A, 6n7n:B, 6n7n:C, 6n7n:D, 6n7n:E, 6n7n:F, 6n7s:A, 6n7s:B, 6n7s:C, 6n7s:D, 6n7s:E, 6n7t:A, 6n7t:B, 6n7t:C, 6n7t:D, 6n7t:E, 6n7t:F, 6n7v:A, 6n7v:B, 6n7v:C, 6n7v:D, 6n7v:E, 6n7v:F, 6n9u:E, 6n9v:A, 6n9v:B, 6n9v:C, 6n9v:D, 6n9v:E, 6n9v:F, 6n9w:A, 6n9w:B, 6n9w:C, 6n9w:D, 6n9w:E, 6n9x:A, 6n9x:C, 6n9x:D, 6n9x:E
8 8dtp:B 432 217 0.1137 0.1134 0.2258 0.018 8dtp:C, 8dtp:D, 8dtp:E, 8dtp:F, 8dtp:A, 8due:B, 8due:C, 8due:D, 8due:E, 8due:F, 8due:A, 8duo:A, 8duo:B, 8duo:C, 8duo:D, 8duo:E, 8duo:F, 8dvf:B, 8dvf:C, 8dvf:D, 8dvf:E, 8dvf:F, 8dvf:A, 8dvi:B, 8dvi:C, 8dvi:D, 8dvi:E, 8dvi:F, 8dvi:A, 8dw6:B, 8dw6:C, 8dw6:D, 8dw6:E, 8dw6:F, 8dw6:A, 8g0z:B, 8g0z:C, 8g0z:D, 8g0z:E, 8g0z:F, 8g0z:A, 8gao:B, 8gao:C, 8gao:D, 8gao:E, 8gao:F, 8gao:A
9 8oo7:E 443 42 0.0441 0.0429 0.4524 0.15 8av6:E, 8av6:D, 8av6:F, 6fhs:E, 6fhs:D, 6fhs:F, 6fml:E, 6fml:D, 6fml:F, 8oo7:D, 8oo7:F, 8ooc:D, 8ooc:E, 8ooc:F, 8oop:D, 8oop:E, 8oop:F, 8oor:D, 8oor:E, 8oor:F, 4ww4:B
10 5fm7:B 422 42 0.0441 0.0450 0.4524 0.16
11 1cr1:A 245 265 0.1183 0.2082 0.1925 0.24 1cr2:A, 1cr4:A
12 6gej:Y 447 42 0.0371 0.0358 0.3810 1.2 8ets:W, 8ets:U, 8ets:Y, 8etu:W, 8etu:U, 8etu:Y, 8etw:W, 8etw:U, 8etw:Y, 8eu9:W, 8eu9:U, 8eu9:Y, 8euf:W, 8euf:U, 8euf:Y, 6gej:U, 6gej:W, 6gen:U, 6gen:W, 6gen:Y
13 8gbj:D 308 51 0.0371 0.0519 0.3137 1.5 8faz:D, 8ouy:C, 8ouz:C
14 5l7j:A 406 59 0.0394 0.0419 0.2881 1.7 6ia6:A, 5l7l:A
15 7zi4:C 447 25 0.0278 0.0268 0.4800 3.5 9c57:E, 9c57:C, 9c57:A, 9c62:C, 9c62:E, 9c62:A, 6hts:A, 6hts:C, 6hts:E, 5oaf:A, 5oaf:C, 5oaf:E, 8x15:M, 8x15:O, 8x15:Q, 8x19:M, 8x19:O, 8x19:Q, 8x1c:M, 8x1c:O, 8x1c:Q, 8xvg:A, 8xvg:C, 8xvg:E, 8xvt:A, 8xvt:C, 8xvt:E, 7zi4:A, 7zi4:E
16 7ole:C 427 25 0.0278 0.0281 0.4800 3.6 7ole:E
17 9ema:A 326 25 0.0278 0.0368 0.4800 3.8 7aho:A, 7aho:C, 2c9o:C, 9ema:B, 9ema:C, 9emc:A, 9emc:B, 9emc:C, 6fo1:A, 6fo1:B, 6fo1:C, 6k0r:A, 6k0r:B, 6k0r:C, 6k0r:G, 6k0r:H, 6k0r:I, 7p6x:A, 7p6x:B, 7p6x:C, 6qi8:C, 6qi9:C, 2xsz:A, 2xsz:B, 2xsz:C
18 6qi8:A 317 75 0.0487 0.0662 0.2800 3.8 7aho:B, 6qi8:B, 6qi9:A, 6qi9:B
19 2c9o:A 398 25 0.0278 0.0302 0.4800 3.9 2c9o:B
20 8ets:V 443 25 0.0302 0.0293 0.5200 4.0 8ets:X, 8ets:T, 8etu:V, 8etu:X, 8etu:T, 8etw:V, 8etw:X, 8etw:T, 8eu9:V, 8eu9:X, 8eu9:T, 8euf:V, 8euf:X, 8euf:T, 6gej:T, 6gej:V, 6gej:X, 6gen:T, 6gen:V, 6gen:X
21 6ulw:A 1193 190 0.0974 0.0352 0.2211 4.2 6ulw:D, 6ulx:A, 6uly:A, 6uly:B
22 7v3x:V 437 195 0.1090 0.1076 0.2410 4.8 7v3x:U
23 3add:A 251 89 0.0487 0.0837 0.2360 5.4 3a4l:A, 3a4l:B, 3a4m:A, 3a4m:B, 3adb:A, 3adb:B, 3adc:A, 3adc:B, 3add:B, 3am1:A
24 7zvo:A 131 43 0.0255 0.0840 0.2558 5.8
25 3feu:A 183 25 0.0232 0.0546 0.4000 7.6
26 8dqo:B 437 40 0.0348 0.0343 0.3750 7.7 8dqo:A, 8dqp:A, 8dqp:B, 8dqq:A, 8dqq:B, 8dqr:A
27 5euh:D 142 67 0.0487 0.1479 0.3134 7.9 5euh:C
28 5nly:B 351 74 0.0464 0.0570 0.2703 7.9 6fne:A
29 4o0m:A 494 76 0.0464 0.0405 0.2632 8.2 5jwo:A, 4o0m:B, 4o0m:C
30 7v3x:O 461 64 0.0418 0.0390 0.2812 8.6 7dy2:D, 7dy2:G, 7dy2:H, 7dy2:L, 7dye:A, 7dye:B, 7dyi:A, 7dyi:B, 7dyj:A, 7dyj:B, 7dyk:A, 7dyk:B, 7v3x:N, 7v3x:P, 7v3x:X, 7v3x:S, 7wdc:A, 7wdc:B, 8wv8:A, 8wv8:B, 8wve:A, 8wve:B
31 5jwq:A 413 76 0.0464 0.0484 0.2632 8.7 5jwq:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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