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BioLiP
>protein
RILLKILLTILIIIALFIGIMYFLSTRDNVDELRKIENKSSFVSADNMPEYVKGAFISMEDERFYNHHGFDLKGTTRALF
STQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNST
TMSHITVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQLNR

The query sequence (length=223) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vmr:A 227 227 0.9955 0.9780 0.9780 5.65e-163 6ftb:A, 3hzs:A, 3vmq:A, 3vmt:A
2 3d3h:A 174 183 0.3094 0.3966 0.3770 6.31e-34
3 2olv:B 618 175 0.2601 0.0939 0.3314 1.31e-22 2olv:A
4 5hlb:A 733 154 0.2287 0.0696 0.3312 3.14e-20
5 3vma:A 708 147 0.2018 0.0636 0.3061 8.43e-16 5fgz:A, 3fwl:A, 5hl9:A, 5hla:A, 6yn0:A
6 3ue1:A 604 99 0.1435 0.0530 0.3232 2.21e-10 3udi:A, 3udi:B, 3udx:A, 3udx:B, 3ue0:A, 3ue0:B, 3ue1:B
7 3zg8:B 458 93 0.1166 0.0568 0.2796 2.98e-06 3zg9:B, 3zga:B
8 5hld:A 649 100 0.1435 0.0493 0.3200 1.63e-04
9 7ml3:7 548 68 0.0897 0.0365 0.2941 4.7
10 1npd:B 288 61 0.0762 0.0590 0.2787 4.8 1npd:A, 1o9b:A, 1o9b:B, 3t4e:A, 3t4e:B, 1vi2:A, 1vi2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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