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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8osl:N 290 54 0.9000 0.1862 1.0000 1.80e-32 4h10:A, 8osk:N, 8osl:P
2 5nj8:D 134 55 0.6167 0.2761 0.6727 3.05e-23
3 7xi4:A 283 55 0.6167 0.1307 0.6727 2.73e-21 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
4 7xi3:A 287 57 0.6000 0.1254 0.6316 1.22e-20
5 4zpr:A 235 53 0.5667 0.1447 0.6415 1.61e-16
6 8ia3:E 111 55 0.3500 0.1892 0.3818 4.84e-08 8ia3:A, 8ia3:B, 8ia3:F
7 5nj8:A 176 42 0.3333 0.1136 0.4762 2.34e-07 5nj8:C, 5v0l:B
8 8osk:M 316 53 0.3333 0.0633 0.3774 4.14e-06 4h10:B, 8osl:M, 8osl:O
9 1an4:A 65 55 0.3167 0.2923 0.3455 1.24e-05 1an4:B
10 7d8t:A 199 53 0.3000 0.0905 0.3396 1.48e-05 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
11 1am9:C 82 53 0.3833 0.2805 0.4340 1.06e-04 1am9:D, 1am9:A, 1am9:B
12 5sy7:B 276 50 0.2667 0.0580 0.3200 7.42e-04
13 8ow1:B 116 56 0.2667 0.1379 0.2857 0.002 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
14 7f2f:B 94 61 0.3167 0.2021 0.3115 0.014 7f2f:A
15 1a0a:A 63 27 0.2000 0.1905 0.4444 0.022 1a0a:B
16 4zpk:B 321 41 0.2333 0.0436 0.3415 0.034 8ck3:A, 8ck4:A, 8ck8:A, 6czw:A, 6d09:A, 6d0b:A, 6e3s:B, 6e3t:B, 6e3u:B, 3f1o:A, 4ghi:A, 4gs9:A, 3h7w:A, 3h82:A, 5tbm:A, 5ufp:A, 7w80:B, 6x21:A, 6x28:A, 6x2h:A, 6x37:A, 6x3d:A, 4xt2:C, 4zqd:B
17 4zpr:B 279 50 0.2333 0.0502 0.2800 0.041
18 5gnj:B 77 51 0.2500 0.1948 0.2941 0.061 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
19 8gs1:B 332 45 0.2500 0.0452 0.3333 0.17 7wux:C, 7wux:D
20 8hov:A 87 39 0.2167 0.1494 0.3333 0.42 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
21 1nlw:A 79 53 0.3000 0.2278 0.3396 0.43 1nlw:D
22 7xi3:B 314 37 0.2167 0.0414 0.3514 0.48 7xhv:B, 7xi4:B
23 7xq5:A 75 40 0.1833 0.1467 0.2750 4.9
24 6h41:A 309 28 0.1833 0.0356 0.3929 5.4 3qt2:B
25 1hlo:A 80 55 0.2167 0.1625 0.2364 7.6
26 5eyo:C 88 55 0.2167 0.1477 0.2364 7.8 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
27 8c7s:A 256 14 0.1500 0.0352 0.6429 8.1 8c7s:B, 5ey0:B, 5ey0:A, 5ey1:A, 5ey1:B
28 7msk:A 421 23 0.1500 0.0214 0.3913 8.5 7msk:B
29 6b6w:B 628 28 0.1333 0.0127 0.2857 9.6 6b6v:A, 6b6v:B, 6b6w:A, 6b6x:A, 6b6x:B, 6b6y:A, 6b6y:B, 6dc2:A, 6dc2:B, 6dc2:C, 6dc2:D, 6onc:A, 6onc:B, 6onc:C, 6onc:D, 6ond:A, 6ond:B, 6ond:C, 6ond:D, 6ons:A, 7tsj:A, 6vwy:A, 6vwy:B, 6vwz:A, 6vwz:B, 6vx0:A, 6vx0:B, 6vx1:A, 6vx1:B
30 2wef:A 303 36 0.1833 0.0363 0.3056 9.7 1jp4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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