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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RIGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAAMHALTDALLSAYGLGDIGLLFPDTDPRWRGERSEVFLREAM
RLVEARGAKLLQASLVLTLDRPKLGPHRKALVDSLSRLMRLPQDRIGLTFKTSEGLAPSHVQARAVVLLD

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1iv2:A 150 150 1.0000 1.0000 1.0000 8.54e-105 1iv2:C, 1iv2:B, 1iv2:D, 1iv2:F, 1iv2:E, 1iv3:A, 1iv3:B, 1iv3:C, 1iv3:D, 1iv3:E, 1iv3:F, 1iv4:A, 1iv4:B, 1iv4:C, 1iv4:D, 1iv4:E, 1iv4:F
2 2pmp:A 160 134 0.4067 0.3812 0.4552 2.98e-38
3 1jn1:A 157 136 0.3733 0.3567 0.4118 1.76e-32 1jn1:B, 1jn1:C, 1vh8:A, 1vh8:B, 1vh8:C, 1vh8:D, 1vh8:E, 1vh8:F, 1vha:A, 1vha:B, 1vha:C, 1vha:D, 1vha:E, 1vha:F
4 3fpi:A 161 155 0.4467 0.4161 0.4323 8.77e-32
5 1t0a:A 158 153 0.4000 0.3797 0.3922 2.90e-31 1t0a:B, 1t0a:C
6 3iew:A 160 136 0.3933 0.3688 0.4338 3.50e-31 3f0d:A, 3f0d:C, 3f0d:D, 3f0d:E, 3f0d:F, 3f0e:A, 3f0e:B, 3f0e:C, 3f0f:A, 3f0f:B, 3f0f:C, 3f0g:A, 3f0g:B, 3f0g:C, 3f0g:D, 3f0g:E, 3f0g:F, 3ieq:A, 3ieq:C, 3ieq:B, 3iew:C, 3iew:B, 3ike:A, 3ike:B, 3ike:C, 3ikf:A, 3ikf:B, 3ikf:C, 3jvh:A, 3jvh:B, 3jvh:C, 3k14:A, 3k14:B, 3k14:C, 3k2x:C, 3k2x:B, 3ke1:A, 3ke1:B, 3ke1:C, 5l03:A, 5l03:B, 5l03:C, 5l12:A, 5l12:B, 5l12:C, 3mbm:A, 3mbm:C, 6mwf:A, 6mwf:B, 6mwf:C, 6mwi:A, 6mwi:B, 6mwi:C, 6mwj:A, 6mwj:B, 6mwj:C, 6mwk:A, 6mwk:B, 6mwk:C, 6nmo:A, 6nmo:B, 6nmo:C, 3p0z:A, 3p0z:C, 3p0z:B, 3p10:A, 3p10:C, 3p10:B, 3q8h:A, 3q8h:B, 3q8h:C, 3qhd:A, 3qhd:C, 3qhd:B, 6v3m:A, 6v3m:B, 6v3m:C
7 5b8f:C 164 134 0.3600 0.3293 0.4030 6.38e-30 5b8f:A, 5b8f:B
8 4c8e:A 161 153 0.4067 0.3789 0.3987 8.15e-30 4c8e:C, 4c8e:B, 4c8g:A, 4c8g:C, 4c8g:B, 4c8i:A, 4c8i:B, 4c8i:C, 3f0d:B, 3k2x:A, 3mbm:B
9 2uzh:C 155 137 0.3733 0.3613 0.4088 3.66e-27 2uzh:A, 2uzh:B
10 3esj:A 162 136 0.3867 0.3580 0.4265 5.34e-27 2amt:A, 2amt:B, 2amt:C, 2amt:D, 2amt:F, 2amt:E, 3elc:A, 3elc:B, 3elc:C, 3eor:A, 3ern:A, 3ern:B, 3ern:C, 3ern:D, 3ern:E, 3ern:F, 3fba:A, 3ghz:A, 3ghz:B, 3ghz:C, 1gx1:A, 1gx1:C, 1gx1:B, 2gzl:A, 1h47:A, 1h47:B, 1h47:C, 1h47:D, 1h47:E, 1h47:F, 1h48:A, 1h48:F, 1h48:C, 1h48:B, 1h48:D, 1h48:E, 1jy8:A, 1knj:A, 1knk:A, 3t80:A, 3t80:B, 3t80:C, 3t80:D, 3t80:E, 3t80:F, 1u3l:A, 1u3p:A, 1u40:A, 1u43:A, 1yqn:A
11 1w55:A 369 134 0.3467 0.1409 0.3881 5.80e-25 1w57:A
12 8xkf:C 377 135 0.3133 0.1247 0.3481 2.05e-24 8xhu:A, 8xhu:B, 8xhu:C, 8xkf:A, 8xkf:B, 8xkf:D, 8xkf:F, 8xkf:E
13 5iwx:A 158 153 0.3467 0.3291 0.3399 6.25e-24 5iwx:B, 5iwx:C, 5iwx:D, 5iwx:E, 5iwx:F, 5iwy:A, 5iwy:C, 5iwy:B, 5iwy:D, 5iwy:E, 5iwy:F
14 4c81:A 156 140 0.3067 0.2949 0.3286 2.30e-17 4c82:A
15 3re3:B 144 136 0.2533 0.2639 0.2794 2.82e-13
16 3b6n:A 150 145 0.2800 0.2800 0.2897 3.91e-12
17 5esv:G 187 120 0.2533 0.2032 0.3167 1.51e-10 5esv:E, 5esv:F
18 8fip:A 338 98 0.2000 0.0888 0.3061 0.077 8fio:A, 8fio:B, 8fip:B
19 5zdk:A 543 84 0.1800 0.0497 0.3214 0.37 5zdl:A
20 8i9x:LB 356 69 0.1267 0.0534 0.2754 2.1 8i9r:LB, 8i9t:LB, 8i9v:LB, 8i9w:LB, 8i9y:LB, 8i9z:LB, 8ia0:LB
21 8pv1:LB 389 69 0.1267 0.0488 0.2754 2.2 7olc:LB, 7old:LB, 8oo0:LB, 8pv2:LB, 8pv3:LB, 8pv4:LB, 8pv5:LB, 8pv6:LB, 8pv7:LB, 8pv8:LB, 8pvk:LB, 8pvl:LB, 7r81:E1, 7z3n:LB, 7z3o:LB
22 6brl:A 502 59 0.1400 0.0418 0.3559 3.3
23 8fet:A 334 84 0.1667 0.0749 0.2976 4.2 8fet:B, 8feu:A, 8feu:B, 8fev:A, 8fev:B, 8few:A, 8few:B
24 5mss:A 717 30 0.0733 0.0153 0.3667 5.0 5mst:A, 5mst:B, 5msw:A
25 7ezi:A 323 125 0.2400 0.1115 0.2880 5.1 7ezl:A
26 7dxp:B 418 39 0.1133 0.0407 0.4359 6.8 7dkg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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