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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP
GTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILT
NSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHI
DDAKYCGHLYGLGNAYEEE

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gmj:B 264 263 1.0000 0.9811 0.9848 0.0 7ax1:B, 4gmj:D, 4gmj:F
2 2p51:A 255 251 0.5521 0.5608 0.5697 1.08e-101 3g0z:A, 3g10:A
3 1uoc:A 263 257 0.3745 0.3688 0.3774 1.36e-54 1uoc:B
4 3d45:B 373 289 0.2394 0.1662 0.2145 0.007 3ctr:A
5 6ym4:A 322 50 0.0656 0.0528 0.3400 0.54 7n7j:A, 7n7k:A, 7n7l:A, 7n7m:A, 7n7n:A, 7n7o:A, 6osp:A, 6osp:B, 6ux9:A, 6ux9:B, 6ym3:A, 6ym3:B, 6ym4:B, 6ym5:A, 6ym5:B
6 3d45:A 383 298 0.2317 0.1567 0.2013 1.6 2a1r:A, 2a1r:B
7 8rev:A 709 59 0.0579 0.0212 0.2542 4.2
8 7k3u:A 362 87 0.0888 0.0635 0.2644 5.2 7k3u:B, 7k3u:C, 7k3u:D, 7k3u:E, 7k3u:F, 7k3u:G, 7k3u:H, 7k3u:I, 7k3u:J, 7n02:A, 7n02:B, 6xmr:A, 6xmr:B, 4zng:C, 4zng:B, 4zng:A
9 8adb:A 209 25 0.0386 0.0478 0.4000 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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