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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RHVFIRTELSFIKNNVPCIRDMFFIYKRELYNICLDDLETHIYVQKKVKDSWITLNDLFKETDLTGRPHIFAYVDVEEII
ILLCEDEEFSNRKKDMTCHRFYSNDGKEYNNAEITISDYILKDKLLSSYVSLPLKIENREYFLICGVSPDDILCMASHDK
GETWGTKIVIKYDNYKLGVQYFFLRPYISKNDLSFHFYVGDNIVKNVNFIECTHEKDLEFVCSNRDFLKDNKVLQDVSTL
NDEYIVSYGNDNNFAECYIFFNNENSILIKPEKYGGCYGGTFVKIDENRALFIYSSSQGIYNIHTIYYANYE

The query sequence (length=312) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pi3:H 321 322 0.9936 0.9657 0.9627 0.0 6mpv:A, 7phw:A, 7phw:D
2 2ber:A 601 77 0.0673 0.0349 0.2727 2.2 2bzd:A, 2bzd:B, 2bzd:C, 1eus:A, 1euu:A, 1w8n:A, 1w8o:A, 1wcq:A, 1wcq:B, 1wcq:C
3 4fbk:A 424 78 0.0673 0.0495 0.2692 3.3 4fbk:B, 4fbq:A, 4fbq:B, 4fbw:A, 4fbw:B
4 5ktc:A 187 63 0.0641 0.1070 0.3175 4.5 5ktd:A
5 4jdz:B 445 139 0.0994 0.0697 0.2230 6.7 4jdz:A, 4je0:A
6 3v97:A 667 77 0.0609 0.0285 0.2468 9.1 3v8v:A
7 5dzc:A 816 40 0.0385 0.0147 0.3000 9.5 8em8:A, 5ezr:A, 5f0a:A, 5fet:A, 4ofg:A, 4rz7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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