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BioLiP
>protein
RGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESERTEWHRVVFFGRLAEIAGEYLRKGSQVYVEGSLRTRKWQGQD
RYTTEIVVDINGNMQLLG

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6irq:C 104 104 1.0000 0.9423 0.9423 3.69e-64 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
2 1eqq:B 120 111 0.8061 0.6583 0.7117 2.43e-51 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
3 5odn:D 106 89 0.5612 0.5189 0.6180 3.70e-35 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
4 5odp:G 100 82 0.4796 0.4700 0.5732 1.66e-26 5odp:A
5 3ulp:C 116 105 0.3878 0.3276 0.3619 6.55e-20 3ulp:A, 3ulp:B, 3ulp:D
6 6bhx:C 102 88 0.3776 0.3627 0.4205 7.56e-15 6bhx:A, 6bhx:B
7 8uzt:B 100 95 0.3878 0.3800 0.4000 9.35e-15
8 2vw9:A 108 85 0.3776 0.3426 0.4353 3.24e-14 2vw9:B
9 8gw5:A 99 90 0.3367 0.3333 0.3667 4.85e-14 7ym1:A
10 6rup:A 111 102 0.3776 0.3333 0.3627 1.20e-13 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
11 7dep:B 102 94 0.3776 0.3627 0.3936 3.30e-12
12 3a5u:A 118 101 0.3469 0.2881 0.3366 2.48e-10 3a5u:B
13 3udg:C 214 86 0.3469 0.1589 0.3953 2.97e-10 3udg:B, 3udg:A
14 3udg:C 214 77 0.2857 0.1308 0.3636 2.35e-07 3udg:B, 3udg:A
15 3vdy:A 101 93 0.3163 0.3069 0.3333 5.09e-10 3vdy:B
16 5c3u:A 315 75 0.2041 0.0635 0.2667 0.60
17 3suc:A 767 59 0.1633 0.0209 0.2712 0.64 3gq7:A, 3gq8:A, 3gqa:A, 3gqk:A
18 5jrc:C 186 36 0.1531 0.0806 0.4167 1.2 5jrc:A, 5jrc:D, 5jre:D, 5jre:H, 5jre:A, 5jre:B, 5jre:C, 5jre:F, 5jre:E, 5jre:G
19 6k52:A 428 83 0.2245 0.0514 0.2651 1.8 6k54:A, 6k54:B, 6k54:C, 6k55:A, 6k55:B, 6k55:C
20 3dfi:A 242 50 0.1837 0.0744 0.3600 3.0
21 2c7v:C 260 51 0.1633 0.0615 0.3137 5.3 3bmc:A, 3bmc:B, 3bmc:C, 3bmc:D, 3bmn:A, 3bmn:B, 3bmn:C, 3bmn:D, 3bmo:A, 3bmo:B, 3bmo:C, 3bmo:D, 3bmq:A, 3bmq:B, 3bmq:C, 3bmq:D, 2c7v:A, 2c7v:B, 2c7v:D, 4cl8:A, 4cl8:B, 4cl8:C, 4cl8:D, 4cld:A, 4cld:B, 4cld:C, 4cld:D, 4cle:A, 4cle:B, 4cle:C, 4cle:D, 4clh:A, 4clh:B, 4clh:C, 4clh:D, 4clo:A, 4clo:B, 4clo:C, 4clo:D, 4clr:A, 4clr:B, 4clr:C, 4clr:D, 4clx:A, 4clx:B, 4clx:C, 4clx:D, 4cm1:A, 4cm1:B, 4cm1:C, 4cm1:D, 4cm3:A, 4cm3:B, 4cm3:C, 4cm3:D, 4cm4:A, 4cm4:B, 4cm4:C, 4cm4:D, 4cm5:A, 4cm5:B, 4cm5:C, 4cm5:D, 4cm6:A, 4cm6:B, 4cm6:C, 4cm6:D, 4cm7:A, 4cm7:B, 4cm7:C, 4cm7:D, 4cm8:A, 4cm8:B, 4cm8:C, 4cm8:D, 4cm9:A, 4cm9:B, 4cm9:C, 4cm9:D, 4cma:A, 4cma:B, 4cma:C, 4cma:D, 4cmb:A, 4cmb:B, 4cmb:C, 4cmb:D, 4cmc:A, 4cmc:B, 4cmc:C, 4cmc:D, 4cme:A, 4cme:B, 4cme:C, 4cme:D, 4cmg:A, 4cmg:B, 4cmg:C, 4cmg:D, 4cmi:A, 4cmi:B, 4cmi:C, 4cmi:D, 4cmj:A, 4cmj:B, 4cmj:C, 4cmj:D, 4cmk:A, 4cmk:B, 4cmk:C, 4cmk:D, 6gck:A, 6gck:B, 6gck:C, 6gck:D, 6gcl:A, 6gcl:B, 6gcl:C, 6gcl:D, 6gcp:A, 6gcp:B, 6gcp:C, 6gcp:D, 6gcq:A, 6gcq:B, 6gcq:C, 6gcq:D, 6gd0:A, 6gd0:B, 6gd0:D, 6gd4:A, 6gd4:B, 6gd4:C, 6gd4:D, 6gdo:A, 6gdo:B, 6gdo:C, 6gdo:D, 6gdp:A, 6gdp:B, 6gdp:C, 6gdp:D, 6gex:A, 6gex:B, 6gex:C, 6gex:D, 6gey:A, 6gey:B, 6gey:C, 6gey:D, 3gn1:A, 3gn1:B, 3gn1:C, 3gn1:D, 3gn2:A, 3gn2:B, 3gn2:C, 3gn2:D, 6hnc:A, 6hnc:B, 6hnc:C, 6hnc:D, 6hnr:A, 6hnr:B, 6hnr:C, 6hnr:D, 6how:A, 6how:B, 6how:D, 5izc:A, 5izc:B, 5izc:D, 5jcj:A, 5jcj:B, 5jcj:D, 5jcx:A, 5jcx:B, 5jcx:D, 5jdc:A, 5jdc:B, 5jdc:D, 5jdi:A, 5jdi:B, 5jdi:C, 5jdi:D, 3jq6:A, 3jq6:B, 3jq6:C, 3jq6:D, 3jq7:A, 3jq7:B, 3jq7:D, 3jq8:A, 3jq8:B, 3jq8:C, 3jq8:D, 3jq9:A, 3jq9:B, 3jq9:C, 3jq9:D, 3jqa:A, 3jqa:B, 3jqa:C, 3jqa:D, 3jqb:A, 3jqb:B, 3jqb:C, 3jqb:D, 3jqc:A, 3jqc:B, 3jqc:C, 3jqc:D, 3jqd:A, 3jqd:B, 3jqd:C, 3jqd:D, 3jqe:A, 3jqe:B, 3jqe:C, 3jqe:D, 3jqf:A, 3jqf:B, 3jqf:C, 3jqf:D, 3jqg:A, 3jqg:B, 3jqg:C, 3jqg:D, 5k6a:A, 5k6a:B, 5k6a:D, 3mcv:A, 3mcv:B, 3mcv:C, 3mcv:D, 8of2:A, 8of2:B, 8of2:C, 8of2:D, 7opj:A, 7opj:B, 7opj:C, 7opj:D, 6rx0:A, 6rx0:B, 6rx0:D, 6rx5:A, 6rx5:B, 6rx5:D, 6rx6:A, 6rx6:B, 6rx6:C, 6rx6:D, 6tbx:A, 6tbx:B, 6tbx:D, 2vz0:A, 2vz0:B, 2vz0:C, 2vz0:D, 4wcd:A, 4wcd:B, 4wcd:D, 4wcf:A, 4wcf:B, 4wcf:C, 4wcf:D, 2wd7:A, 2wd7:B, 2wd7:C, 2wd7:D, 2wd8:A, 2wd8:B, 2wd8:C, 2wd8:D, 2x9g:A, 2x9g:B, 2x9g:C, 2x9g:D, 2x9n:A, 2x9n:B, 2x9n:C, 2x9n:D, 2x9v:A, 2x9v:B, 2x9v:C, 2x9v:D, 2yhi:A, 2yhi:B, 2yhi:C, 2yhi:D, 2yhu:A, 2yhu:B, 2yhu:C, 2yhu:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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