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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RGSHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNI
KVYIVAGNHEMPRRLGEESPLALLKDYVKILDGKDVINVNGEEIFICGTYYHKKSKREEMLDKLKNFESEAKNYKKKILM
LHQGINPYIPLDYELEHFDLPKFSYYALGHIHKRILERFNDGILAYSGSTEIIYRNEYEDYKKEGKGFYLVDFSGNDLDI
SDIEKIDIECREFVEVNIKDKKSFNEAVNKIERCKNKPVVFGKIKREFKPWFDTLKDKILINKAIIVDDEFIDMPD

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5dny:A 352 306 0.9684 0.8693 1.0000 0.0 3auz:A, 5dny:C, 5f3w:A, 5f3w:C, 4tug:A, 4tug:B, 4tug:C, 4tug:D, 4tug:E, 4tug:F, 4tui:B, 4tui:A
2 3dsc:A 333 292 0.2911 0.2763 0.3151 2.07e-22 3dsd:A, 3dsd:B, 4hd0:A, 4hd0:B, 1ii7:A, 1ii7:B, 1s8e:A, 1s8e:B
3 7dog:A 319 124 0.1171 0.1160 0.2984 2.90e-05 7dog:B
4 6s6v:A 386 318 0.1962 0.1606 0.1950 0.007 4m0v:A, 4m0v:B, 4m0v:C, 4m0v:D, 6s6v:B, 6s85:A, 7yzo:A, 7yzo:B, 7yzp:A, 7z03:A, 7z03:B
5 6s85:B 356 298 0.1867 0.1657 0.1980 0.010 7yzp:B
6 7zr1:A 529 64 0.0665 0.0397 0.3281 0.023 4yke:A, 4yke:B, 7zr1:B
7 3d03:A 274 89 0.0854 0.0985 0.3034 0.029 3d03:B, 3d03:C, 3d03:D, 3d03:E, 3d03:F, 2dxl:A, 2dxl:B, 2dxn:A, 2dxn:B, 2zo9:B, 2zo9:C, 2zoa:A, 2zoa:B
8 4fbk:A 424 63 0.0633 0.0472 0.3175 0.30 4fbk:B, 4fbq:A, 4fbq:B, 4fbw:A, 4fbw:B
9 4fcx:B 369 63 0.0633 0.0542 0.3175 0.30 4fcx:A
10 4bhd:B 395 99 0.0886 0.0709 0.2828 0.31
11 6nwa:Y 340 79 0.0696 0.0647 0.2785 0.62 6nwa:W, 6nwa:X, 6nwa:Z, 6nwa:g, 6nwa:h, 6nwa:y, 6nwa:n, 6nwa:o, 6nwa:p, 6nwa:q, 6nwa:r, 6nwa:v, 6nwa:t, 6nwa:u, 6nwa:s, 6nwa:w, 6nwa:x, 7umh:W, 7umh:X, 7umh:Y, 7umh:Z, 7umh:g, 7umh:h, 7umh:n, 7umh:o, 7umh:p, 7umh:q, 7umh:r, 7umh:v, 7umh:s, 7umh:w, 7umh:t, 7umh:u, 7umh:x, 7umh:y
12 4uqv:G 429 64 0.0696 0.0513 0.3438 1.2 4uqv:A, 4uqv:B, 4uqv:C, 4uqv:D, 4uqv:E, 4uqv:F, 4uqv:H, 4uqv:I, 4uqv:J, 4uqv:K, 4uqv:L
13 8he6:B 120 78 0.0633 0.1667 0.2564 3.9
14 1w7j:A 752 86 0.0665 0.0279 0.2442 4.4 7pm5:A, 7pm6:A, 7pm6:D, 7pm7:A, 7pm8:A, 7pm9:A, 7pma:A, 7pmb:A, 7pmc:A, 7pmd:A, 7pme:A, 7pme:D, 7pmf:A, 7pmg:A, 7pmh:A, 7pmi:A, 7pmj:A, 7pml:A, 1w7i:A
15 5hmp:B 712 72 0.0601 0.0267 0.2639 6.1 5hmp:A, 4zg4:B, 4zg4:E
16 8bah:A 399 64 0.0538 0.0426 0.2656 6.4 8bah:B, 3t1i:A, 3t1i:B, 3t1i:C, 3t1i:D
17 4as2:A 327 44 0.0443 0.0428 0.3182 9.3 4as2:B, 4as2:C, 4as2:D, 4as3:A, 4as3:B, 4as3:C, 4as3:D
18 5e9a:B 684 46 0.0443 0.0205 0.3043 9.4 5e9a:A, 5e9a:C, 5e9a:D, 5e9a:E, 5e9a:F
19 4v7h:BM 178 39 0.0380 0.0674 0.3077 9.9
20 7vlb:B 353 85 0.0633 0.0567 0.2353 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218