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BioLiP Library
>protein
RGSFLDKSEVADRVISCVKNFQKVDPAKVTPNAHFQNDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINSIKHAVDFIA
SHPQA

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8e73:AB 85 85 1.0000 1.0000 1.0000 3.06e-58
2 8bee:U 87 85 0.8706 0.8506 0.8706 4.11e-50 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
3 7ar7:T 84 81 0.6000 0.6071 0.6296 3.16e-33 7ar8:T, 8bq6:T
4 6sga:Fc 84 82 0.5412 0.5476 0.5610 9.23e-29 6sgb:Fc, 6yxy:EK
5 7zmb:Q 85 82 0.5294 0.5294 0.5488 1.09e-25 7zm7:O, 7zmb:O, 7zme:Q, 7zmg:O, 7zmg:Q
6 7b0n:U 88 82 0.4588 0.4432 0.4756 3.42e-25 6rfq:Q, 6rfr:Q, 6y79:Q
7 7ak6:U 88 71 0.4588 0.4432 0.5493 2.99e-24 7a5h:w, 7ak6:T, 8c2s:T, 8c2s:U, 8ca3:T, 8ca5:T, 8ca5:U, 6g2j:U, 6g72:U, 5gup:O, 5gup:X, 5lnk:j, 5lnk:X, 6odd:A, 7oi6:w, 7oi8:w, 7oie:w, 8olt:T, 8om1:U, 5ool:w, 5oom:w, 8pw7:T1, 8q0a:T, 8q0a:U, 8q0f:U, 8q0o:U, 8q1p:T, 8q1u:T, 8q1y:U, 8q25:T, 8q45:T, 8q46:T, 8q46:U, 8q47:T, 8q47:U, 8q49:U, 6q9b:AB, 6q9d:AA, 6qa9:AA, 6qa9:AB, 6qbx:AA, 6qbx:AB, 6qc5:AA, 6qc6:AA, 6qc7:AA, 6qc8:AB, 7qsd:T, 7qsl:T, 7qsn:T, 8qu5:w, 7r41:T, 7r43:T, 7r44:T, 7r45:T, 7r46:T, 7r47:T, 7r47:U, 7r48:T, 7r4c:T, 7r4d:T, 7r4f:U, 7r4g:T, 8rgt:T, 8ud1:1U, 8ueo:1T, 8ueo:1U, 8uep:1U, 8ueq:1T, 8ueq:1U, 8uer:1T, 8uer:1U, 8ues:1T, 8ues:1U, 8uet:1T, 8ueu:1T, 8ueu:1U, 8uev:1T, 8uew:1T, 8uew:1U, 8uex:1T, 8uex:1U, 8uey:1T, 8uey:1U, 8uez:1T, 8uez:1U, 8ugh:1U, 8ugi:1U, 8ugj:1U, 8ugn:1T, 8ugn:1U, 8ugn:5U, 8ugr:1U, 8ugr:5T, 8ugr:5U, 7v2d:X, 7v2f:X, 7v2k:X, 7v30:X, 7v32:X, 7v33:G, 7v3m:X, 7vbl:X, 7vbp:X, 7vwj:G, 7vwl:X, 7vy1:X, 7vye:X, 7vyi:X, 7vzv:X, 7w00:X, 7w0h:X, 7w1o:X, 7w1p:X, 7w20:X, 7w2k:X, 7w2l:X, 7w31:G, 7w32:X, 7w35:X, 7w4c:X, 7w4g:X, 7w4j:X, 7w4k:X, 7w4l:X, 7w4n:X, 7zdh:X, 7zdm:j, 7zdm:X, 7zdp:X, 7zdp:j, 6zka:X, 6zkb:X, 6zkc:X, 6zkd:j, 6zke:X, 6zkf:X, 6zkg:X, 6zkh:X, 6zkh:j, 6zki:X, 6zkj:X, 6zkk:X, 6zkl:X, 6zkm:X, 6zkm:j, 6zkn:X, 6zkn:j, 6zko:X, 6zkp:X, 6zkp:j, 6zkr:X, 6zks:X, 6zkt:X, 6zku:X, 6zr2:T, 6zr2:U, 6ztq:U
8 8iuf:AB 88 82 0.4471 0.4318 0.4634 4.64e-22 8j9h:AB, 8j9i:AB, 8j9j:AB
9 8ba0:U 85 71 0.4000 0.4000 0.4789 8.58e-21 8ba0:T, 8esz:AC
10 7arc:U 84 84 0.4706 0.4762 0.4762 9.63e-21 7ard:U
11 8iuf:AC 92 82 0.4824 0.4457 0.5000 1.07e-20 8j9h:AC, 8j9i:AC, 8j9j:AC
12 2fac:A 77 75 0.4471 0.4935 0.5067 1.22e-19 2fac:B, 2fad:A, 2fad:B, 2fae:A, 4keh:C, 4keh:D, 1l0i:A, 6n3p:I, 6n3p:L, 6n3p:J, 3ny7:B, 7nyw:G, 7nyx:G, 7nyy:G, 7nyz:G, 7nz0:G, 7nz2:G1, 7nz2:G2, 7nz2:G3, 7nz2:G4, 7nz3:G1, 7nz3:G2, 7nz4:G1, 7nz4:G2, 1t8k:A, 5usr:K, 5vcb:f, 5vcb:e, 5vcb:d, 5vcb:F, 5vcb:D, 5vcb:X, 6w1d:C, 6w98:B
13 8jfh:E 79 62 0.4000 0.4304 0.5484 1.63e-17 8jfn:B
14 2eht:A 77 68 0.3647 0.4026 0.4559 3.30e-17
15 7b0n:T 81 74 0.4588 0.4815 0.5270 3.11e-16 6gcs:O, 7o6y:O, 6rfq:O, 6rfr:O, 6rfs:O, 6y79:O
16 2qnw:A 80 74 0.3882 0.4125 0.4459 1.35e-15
17 2x2b:A 76 71 0.3765 0.4211 0.4507 1.63e-14
18 3gzl:A 81 56 0.3294 0.3457 0.5000 2.15e-14 2fq0:A, 2fq2:A, 3gzm:B
19 6lvu:A 78 73 0.3176 0.3462 0.3699 6.62e-11 6lvu:B
20 2fva:A 82 74 0.3765 0.3902 0.4324 4.37e-10
21 2koo:A 81 54 0.2353 0.2469 0.3704 1.04e-06 2kop:A, 2koq:A, 2kor:A, 2kos:A
22 2ll8:A 101 51 0.2118 0.1782 0.3529 1.94e-06
23 6kfu:A 527 80 0.2706 0.0436 0.2875 8.56e-05 6kfm:A, 6kfm:B, 6kfr:A, 6kfr:B
24 2k0x:A 86 42 0.1765 0.1744 0.3571 8.45e-04 2kg6:A, 2kg8:A, 2kg9:A, 2kga:A, 2kgc:A, 2kgd:A, 2kge:A, 2mvu:A, 2mvv:A
25 5hv8:A 95 37 0.1647 0.1474 0.3784 0.059
26 4h2y:D 63 29 0.1294 0.1746 0.3793 0.10
27 4h2w:D 75 25 0.1294 0.1467 0.4400 0.17 4h2x:D
28 5mss:A 717 49 0.2353 0.0279 0.4082 0.17 5mst:A, 5mst:B, 5msw:A
29 5kp8:B 78 76 0.2000 0.2179 0.2237 0.18
30 5msr:B 520 35 0.2000 0.0327 0.4857 0.22 5msp:A, 5msr:A, 5msr:C, 5msr:D, 5msv:A, 5msv:B, 5msv:C, 5msv:D
31 2lki:A 83 25 0.1412 0.1446 0.4800 0.59
32 3dnt:A 415 48 0.1647 0.0337 0.2917 0.77 3tpt:A, 4yg7:K
33 4bph:A 85 62 0.2118 0.2118 0.2903 1.4
34 2grm:A 315 59 0.1647 0.0444 0.2373 2.0 2aw6:B, 2aw6:A, 2axz:A, 2axz:B, 2axz:D, 2axz:C, 2grl:B, 2grm:B
35 2auv:A 85 60 0.2235 0.2235 0.3167 2.0
36 7er7:A 207 32 0.1294 0.0531 0.3438 2.7 7er6:A, 7er6:B, 7er7:B, 7er8:A, 7er8:B, 7er9:A, 7er9:B, 7era:A, 7era:B, 7erb:A, 7erb:B, 7erb:C, 7erb:D, 7erc:A, 7erc:B, 7erd:A, 7erd:B, 7ere:A, 7ere:B, 7ere:C, 7ere:D, 1hdo:A, 1he2:A, 1he3:A, 1he4:A, 1he5:A, 5oog:A, 5ooh:A, 6opl:A
37 5eyt:A 472 25 0.1059 0.0191 0.3600 3.0
38 4r2l:A 142 41 0.2000 0.1197 0.4146 3.8 4r2l:B, 4r2m:A, 4r2m:B
39 8rdj:F 660 37 0.1529 0.0197 0.3514 3.9
40 6z2w:E 2325 44 0.1647 0.0060 0.3182 4.8 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
41 8ahq:C 78 36 0.1529 0.1667 0.3611 5.0 8ahq:D
42 8qzi:E 86 57 0.1882 0.1860 0.2807 5.2 7bdw:B, 6rcx:B
43 4ob3:A 204 27 0.1176 0.0490 0.3704 6.8 9d6k:A, 8i6n:A, 1ire:A, 4ob0:A, 4ob1:A, 4ob2:A, 1ugp:A, 1ugr:A, 1ugs:A, 3vyh:A, 7w8l:A, 7w8m:A
44 2jal:B 444 36 0.1176 0.0225 0.2778 8.4 2cbu:A, 2cbu:B, 2cbv:A, 2cbv:B, 2ces:A, 2ces:B, 2cet:A, 2cet:B, 2j75:A, 2j75:B, 2j77:A, 2j77:B, 2j78:A, 2j78:B, 2j79:A, 2j79:B, 2j7b:A, 2j7b:B, 2j7c:A, 2j7c:B, 2j7d:A, 2j7d:B, 2j7e:A, 2j7e:B, 2j7f:A, 2j7f:B, 2j7g:A, 2j7g:B, 2j7h:A, 2j7h:B, 2jal:A, 5n6s:A, 5n6s:B, 5n6s:C, 5n6s:D, 5n6t:A, 5n6t:B, 1oif:A, 1oif:B, 1oim:A, 1oim:B, 1oin:A, 1oin:B, 5oss:B, 1uz1:A, 1uz1:B, 2vrj:A, 2vrj:B, 1w3j:A, 1w3j:B, 2wbg:A, 2wbg:B, 2wbg:C, 2wbg:D, 2wc3:A, 2wc3:B, 2wc3:C, 2wc3:D, 2wc4:A, 2wc4:B, 2wc4:C, 2wc4:D
45 7ymo:A 206 69 0.2353 0.0971 0.2899 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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