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BioLiP
>protein
RGSFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEA
GINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIMGAQVPLGAGIALACKYNGK
DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRS
GKGPILMELQTYSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGAN
QWIKFKSVS

The query sequence (length=329) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6cer:A 342 342 0.9970 0.9591 0.9591 0.0 6cer:C, 6cer:E, 6cer:G, 3exh:E
2 3exe:A 363 361 0.9878 0.8953 0.9003 0.0 6cfo:A, 6cfo:C, 3exe:C, 3exe:E, 3exe:G, 3exf:A, 3exf:C, 3exf:E, 3exf:G, 3exh:A, 3exh:C, 3exh:G, 1ni4:C, 1ni4:A, 2ozl:A, 2ozl:C
3 1umb:A 362 233 0.2219 0.2017 0.3133 3.65e-26 1umb:C, 1umc:A, 1umc:C, 1umd:A, 1umd:C
4 3dv0:E 344 305 0.2614 0.2500 0.2820 1.85e-25 1w88:A, 1w88:C, 1w88:E, 1w88:G
5 3duf:A 365 325 0.2614 0.2356 0.2646 1.17e-22 3duf:C, 3duf:E, 3duf:G, 3dv0:A, 3dv0:C, 3dv0:G, 3dva:A, 3dva:C, 3dva:E, 3dva:G, 1w85:A, 1w85:C, 1w85:E, 1w85:G
6 1v1m:A 372 299 0.2584 0.2285 0.2843 1.32e-22 2bfb:A, 2bfc:A, 1olu:A, 1v11:A, 1v16:A, 1x7w:A, 1x7x:A, 1x7y:A, 1x80:A
7 2bff:A 392 319 0.2644 0.2219 0.2727 8.35e-20 2beu:A, 2bev:A, 2bew:A, 2bfd:A, 2bfe:A, 1dtw:A, 2j9f:A, 2j9f:C, 1ols:A, 1olx:A, 1u5b:A, 1wci:A, 1x7z:A
8 1qs0:A 407 198 0.1793 0.1450 0.2980 3.92e-16
9 4q9d:B 519 102 0.0973 0.0617 0.3137 1.17e-05 4q9d:A
10 6a50:A 527 141 0.1064 0.0664 0.2482 2.64e-04 6a50:B, 1bfd:A, 5dei:A, 5dei:C, 5dei:D, 5dei:B, 5dgd:A, 5dgt:A, 3f6b:X, 3f6e:X, 2fn3:A, 3fsj:X, 2fwn:A, 3fzn:A, 3fzn:B, 3fzn:D, 3fzn:C, 4gg1:A, 4gm0:A, 4gm1:A, 4gm4:A, 4gp9:A, 4gpe:A, 4jd5:A, 4ju8:A, 4ju9:A, 4jua:A, 4jub:A, 4jub:D, 4jub:B, 4jub:C, 4juc:A, 4juc:C, 4juc:B, 4juc:D, 4jud:X, 4juf:A, 4juf:C, 4juf:B, 4juf:D, 4k9k:A, 4k9l:A, 4k9m:A, 4k9n:A, 4k9n:C, 4k9n:B, 4k9n:D, 4k9o:A, 4k9o:C, 4k9o:B, 4k9o:D, 4k9p:A, 4k9p:C, 4k9p:B, 4k9p:D, 6m2y:A, 6m2z:A, 1mcz:A, 1mcz:B, 1mcz:C, 1mcz:D, 1mcz:E, 1mcz:F, 1mcz:G, 1mcz:H, 1mcz:I, 1mcz:J, 1mcz:K, 1mcz:L, 1mcz:M, 1mcz:N, 1mcz:O, 1mcz:P, 4mpj:A, 4mpp:A, 4mpr:A, 4mq5:A, 4mzx:A, 1pi3:A, 1po7:A, 1q6z:A, 4qel:A, 2v3w:A, 2v3w:C, 2v3w:B, 2v3w:D, 1yno:A
11 7orx:CCC 531 138 0.1155 0.0716 0.2754 0.002 7orx:AAA, 7orx:BBB, 7orx:DDD
12 2o1s:A 536 147 0.1277 0.0784 0.2857 0.003 2o1s:C
13 2o1s:B 493 110 0.1003 0.0669 0.3000 0.008 2o1s:D
14 8a45:F 573 260 0.1672 0.0960 0.2115 0.015 8a29:A, 8a29:B, 8a29:C, 8a29:D, 8a29:E, 8a29:F, 8a45:A, 8a45:B, 8a45:C, 8a45:D, 8a45:E, 8a4d:A, 8a4d:B, 8a4d:C, 8a4d:D, 8a4d:E, 8a4d:F, 8a5k:A, 8a5k:B, 8a5k:C, 8a5k:D, 8a5k:E, 8a5k:F
15 4k9q:A 531 103 0.0729 0.0452 0.2330 0.52 4k9q:B
16 1itw:A 740 93 0.0881 0.0392 0.3118 0.71 1itw:B, 1itw:C, 1itw:D, 1j1w:A, 1j1w:B, 1j1w:C, 1j1w:D
17 6rjb:B 622 66 0.0699 0.0370 0.3485 0.86 6ha3:A, 6had:A, 4kxu:A, 4kxv:A, 4kxw:A, 4kxx:A, 4kxy:A, 4kxy:B, 3mos:A, 3ooy:A, 3ooy:B, 6rjb:A, 8wa8:A, 8wa9:A, 8wa9:B, 8waa:A, 8waa:B
18 6yak:AAA 282 83 0.0760 0.0887 0.3012 0.96 6yak:CCC
19 4h9d:A 97 20 0.0304 0.1031 0.5000 1.5 4h9d:B, 4h9d:C
20 5it7:HH 191 55 0.0486 0.0838 0.2909 1.5 6uz7:AH
21 8r57:Q 145 61 0.0578 0.1310 0.3115 1.9 8ip8:la, 8ip9:la, 8ipa:la, 8ipb:la, 8jiw:BQ, 4v3p:SI, 4v7e:BQ
22 6ouv:A 595 70 0.0578 0.0319 0.2714 2.0 2o1x:A, 2o1x:B, 6ouv:B, 8v9i:A, 8v9i:B
23 8a9c:B 520 93 0.0912 0.0577 0.3226 2.0
24 3iyd:A 322 79 0.0790 0.0807 0.3291 2.3 6b6h:I, 7beg:B, 7c17:A, 7c97:K, 7chw:K, 5ciz:B, 7dy6:K, 8ftd:R, 8igr:G, 7khc:A, 7khc:B, 1lb2:B, 1lb2:E, 7mkd:R, 7mkj:R, 3n4m:B, 3n4m:C, 6n4c:A, 6n4c:B, 3n97:B, 3n97:C, 6oul:R, 6psq:M, 6psr:M, 6pss:M, 6pst:M, 6psu:M, 6psv:M, 6psw:M, 8tom:M, 8u3b:A, 7w5x:A, 7w5y:A, 8y6u:I
25 1v0p:A 277 70 0.0578 0.0686 0.2714 2.3 1v0o:A, 1v0o:B, 1v0p:B
26 8bzx:A 546 100 0.0851 0.0513 0.2800 4.1
27 8r3r:A 658 141 0.1155 0.0578 0.2695 6.5 8r3r:B, 8r3r:C, 8r3r:D
28 4v4o:F 529 70 0.0760 0.0473 0.3571 7.4 4v4o:A, 4v4o:B, 4v4o:C, 4v4o:D, 4v4o:E, 4v4o:G, 4v4o:a, 4v4o:b, 4v4o:c, 4v4o:d, 4v4o:e, 4v4o:f, 4v4o:g
29 3cf4:A 766 42 0.0456 0.0196 0.3571 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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