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BioLiP
>protein
RGPRKGGRVIAPKKARVVQQQKLKKNLEVGIRKKIEHDVVMKASS

The query sequence (length=45) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fla:VB 58 44 0.9778 0.7586 1.0000 8.12e-25 8flb:VB, 8flc:VB, 8idt:T, 8idy:T, 8ine:T, 8inf:T
2 8jun:A 678 39 0.3111 0.0206 0.3590 3.5 8jun:B
3 3egd:B 731 25 0.2444 0.0150 0.4400 3.6 3egx:B, 8hr0:B, 2nup:B, 2nut:B, 5vne:B, 5vnf:B, 5vng:B, 5vnh:B, 5vni:B, 5vnj:B, 5vnk:B, 5vnl:B, 5vnm:B, 5vnn:B, 5vno:B
4 3j79:I 207 24 0.3111 0.0676 0.5833 4.2 3jbn:AI, 3jbo:AI, 3jbp:AI, 8tpu:AI, 5umd:I
5 5xut:A 1217 23 0.2222 0.0082 0.4348 4.6 5id6:A, 6nm9:B, 6nm9:D, 6nma:B, 6nmc:A, 6nmd:A, 6nme:A, 6omv:B, 5xus:A, 5xuu:A, 5xuz:A, 5xuz:E
6 6kl9:A 1180 23 0.2222 0.0085 0.4348 4.8
7 6klb:A 1118 23 0.2222 0.0089 0.4348 5.3 6klb:D
8 8woq:A 647 39 0.3333 0.0232 0.3846 5.6 8j6m:B, 8j6m:A, 8jul:A, 8jul:B, 8kcw:A, 8kcw:C, 8woq:B, 8wor:A, 8wor:B, 8wos:A, 8wos:B, 8wot:A, 8wot:B
9 4pfy:A 539 27 0.2444 0.0204 0.4074 6.1 4pft:A, 4pft:B, 4pfy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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