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BioLiP
>protein
RFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGACTKHNEETGDNVGPLIIKKKE

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ew0:A 77 75 0.9867 0.9610 0.9867 1.46e-51 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
2 3fnv:B 68 66 0.6000 0.6618 0.6818 1.08e-28 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
3 7yvz:A 63 62 0.4933 0.5873 0.5968 7.94e-24
4 3s2r:B 78 63 0.4267 0.4103 0.5079 7.12e-19 3s2q:A, 3s2q:B, 3s2r:A
5 6avj:A 92 37 0.2400 0.1957 0.4865 0.007 6avj:B, 6avj:C
6 6avj:A 92 30 0.1200 0.0978 0.3000 3.5 6avj:B, 6avj:C
7 3tbn:A 87 16 0.1333 0.1149 0.6250 0.55
8 6z1p:AV 129 53 0.2533 0.1473 0.3585 1.1
9 3tbm:A 61 19 0.1333 0.1639 0.5263 1.7 3tbm:B
10 5tbd:G 112 33 0.1733 0.1161 0.3939 1.8 5tbd:F, 5tbd:B, 5tbd:K
11 7ase:f 1523 39 0.1600 0.0079 0.3077 4.1 7ask:F
12 5nz8:A 884 17 0.1200 0.0102 0.5294 4.9
13 7bkb:B 296 33 0.1200 0.0304 0.2727 9.5 7bkb:b, 7bkc:B, 7bkc:b, 7bkd:B, 7bkd:b, 7bke:B, 7bke:b
14 7kcv:A 362 22 0.1200 0.0249 0.4091 9.6 6c39:A, 6dz8:A, 6dz8:B, 3hum:A, 3hum:B, 3hun:A, 3hun:B, 7kcw:A, 7kcx:A, 7kcy:A, 5tw4:A, 5tw4:B, 5tw8:A, 5tw8:B, 5tx9:A, 5tx9:B, 5txi:A, 5txi:B, 5ty2:A, 5ty2:B, 5ty7:A, 5ty7:B
15 2zze:A 744 23 0.1333 0.0134 0.4348 9.7 2zze:B, 2zzf:A, 2zzg:A, 2zzg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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