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BioLiP
>protein
RFSFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKTGPQGWSPRERAALQEELSDVLIYLVA
LAARCRVDLPLAVLSKMDINRRRYP

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7mu5:A 110 109 1.0000 0.9545 0.9633 6.92e-71 7mu5:E, 7mu5:B, 7mu5:H, 7mu5:C, 7mu5:D, 7mu5:F, 7mu5:G
2 6sqw:A 114 108 0.8952 0.8246 0.8704 8.08e-64 2oig:B, 2oig:A, 2oig:D, 6sqw:D, 6sqy:A, 6sqy:D, 6sqz:A, 6sqz:D
3 4qgp:A 108 99 0.3429 0.3333 0.3636 4.83e-15 4qgp:B
4 2q5z:B 94 76 0.2476 0.2766 0.3421 2.08e-04 2q5z:A, 2q73:A, 2q73:B, 2q73:C, 2q73:D, 2q9l:A, 2q9l:B, 2q9l:C, 2q9l:D
5 5ie9:C 95 66 0.1905 0.2105 0.3030 0.012 5ie9:A, 5ie9:B, 5ie9:D
6 7ody:C 100 73 0.2190 0.2300 0.3151 0.54 7ody:A, 7ody:B, 7ody:D
7 9f2k:A 513 22 0.1048 0.0214 0.5000 1.3
8 4dl8:A 224 65 0.1429 0.0670 0.2308 1.3 4dk4:A, 4dk4:B, 4dkb:A, 4dlc:A
9 8u3g:A 427 26 0.1048 0.0258 0.4231 4.0 8u3h:A
10 4ry8:B 321 31 0.1143 0.0374 0.3871 4.3 4ry8:A, 4ry8:C, 4ry8:D
11 3frh:A 241 32 0.1143 0.0498 0.3750 5.6 3b89:A, 3fri:A
12 5euf:B 416 35 0.1048 0.0264 0.3143 6.1 5euf:A
13 4u08:A 391 38 0.1238 0.0332 0.3421 9.8 4u08:B
14 1g6u:A 48 31 0.1143 0.2500 0.3871 9.9 1g6u:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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