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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLYIAAVRELHSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIF
HPNIQAAKDCNQVRDFITKEVSDVNTAEWGTFVAVS

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6we0:A 119 119 0.9914 0.9664 0.9664 2.87e-80 6we1:A, 6we1:D
2 7kik:A 121 77 0.6379 0.6116 0.9610 9.61e-48
3 7kik:A 121 43 0.3621 0.3471 0.9767 6.31e-24
4 7vg8:A 108 114 0.3793 0.4074 0.3860 9.76e-19
5 8wai:A 277 33 0.1121 0.0469 0.3939 0.41 8kce:A, 8wai:B
6 2v40:A 419 81 0.1724 0.0477 0.2469 2.6
7 4ax8:A 450 33 0.1207 0.0311 0.4242 7.4 4azs:A, 4azt:A, 4azv:A
8 4uw0:A 501 33 0.1207 0.0279 0.4242 7.4 4azw:A
9 6y1w:A 505 53 0.1207 0.0277 0.2642 8.1 6y1w:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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