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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RFLFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWTFKYRYWPNNNSRMYVLENTGDFVNAHG
LQLGDFIMVYQDLYSNNYVIQARKAS

The query sequence (length=106) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6j9b:A 106 106 1.0000 1.0000 1.0000 2.12e-78 6j9b:D
2 6j9c:D 112 98 0.5189 0.4911 0.5612 9.89e-38 6j9c:A
3 5yzy:C 111 104 0.4151 0.3964 0.4231 1.40e-27 6fas:A, 6fas:B, 6j9a:A, 5yzz:C, 5z00:C, 5z00:G, 5z00:K
4 7et6:D 109 86 0.3302 0.3211 0.4070 7.63e-15 7et6:A
5 8ceo:Q 221 77 0.2264 0.1086 0.3117 0.011 5fmf:U, 7o4i:Q, 5sva:f, 7zs9:Q
6 4l9p:A 335 57 0.1698 0.0537 0.3158 0.21
7 6nb3:A 1169 78 0.2453 0.0222 0.3333 0.22 5gmq:A, 6j11:A, 6j11:B, 6j11:C, 7m5e:C, 7m5e:E, 7m5e:A, 6nb4:A, 6pxh:A, 6pxh:B, 6q04:C, 6q04:A, 6q04:B, 6q05:C, 6q05:A, 6q05:B, 6q06:C, 6q06:A, 6q06:B, 6q07:C, 6q07:A, 6q07:B, 7ymt:B, 7ymt:C, 7ymv:A, 7ymv:B, 7ymy:B, 7ymz:B, 7yn0:A, 7yn0:B, 7yn0:C
8 8wbd:B 330 47 0.1321 0.0424 0.2979 0.53 8wbd:C
9 8wbd:b 352 47 0.1321 0.0398 0.2979 0.53
10 4fdt:A 398 70 0.1887 0.0503 0.2857 1.7 4fdt:B, 4fdu:A, 4fdu:B
11 3din:A 816 59 0.1698 0.0221 0.3051 4.5 3din:B, 3jux:A, 4ys0:A
12 3jyf:A 336 28 0.1038 0.0327 0.3929 4.8 3jyf:B
13 5m3e:A 152 34 0.1132 0.0789 0.3529 5.3
14 8pjb:A 962 48 0.1604 0.0177 0.3542 5.7 8b9g:A, 8b9k:A, 8pjj:A
15 5aor:A 1009 48 0.1604 0.0168 0.3542 5.8 5aor:B, 8b9i:A, 8b9j:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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