Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE
WEFQK

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2lgv:A 100 85 0.9529 0.8100 0.9529 2.53e-55 4a0c:D, 8b3g:R, 8b3i:R, 7b5l:R, 7b5m:R, 7b5n:R, 7b5s:R, 8cdk:R, 3dpl:R, 3dqv:R, 3dqv:Y, 4f52:B, 4f52:D, 8gq6:E, 8gq6:D, 8h33:D, 8h33:K, 8h33:L, 8h33:E, 8h34:R, 8h34:Q, 8h34:E, 8h34:D, 8h34:L, 8h34:K, 8h35:E, 8h35:D, 8h35:L, 8h35:K, 8h35:R, 8h35:Q, 8h35:W, 8h35:X, 8h36:E, 8h36:D, 8h37:E, 8h37:D, 8h37:R, 8h37:Q, 8h38:R, 8h3a:R, 8h3f:R, 8h3q:E, 8h3r:E, 8h3r:D, 2hye:D, 8jaq:R, 8jaq:V, 8jas:R, 8jas:V, 8jav:R, 8jav:V, 1ldj:B, 1ldk:C, 5n4w:R, 8or0:B, 8or2:B, 8or3:B, 4p5o:B, 4p5o:D, 7plo:T, 8pql:K, 8q7h:C, 8q7h:D, 8q7r:R, 8qu8:E, 8r5h:R, 6r7i:R, 6r7n:R, 8rhz:C, 8rhz:D, 3rtr:B, 3rtr:D, 3rtr:F, 3rtr:H, 8rwz:R, 8rx0:R, 6ttu:R, 1u6g:B, 8wqa:J, 8wqa:I, 8wqb:I, 8wqb:E, 8wqc:F, 8wqc:J, 8wqe:J, 8wqe:I, 8wqf:I, 8wqf:E, 8wqg:F, 8wqg:J, 8wqh:J, 8wqh:B, 7z8b:R, 7z8r:R, 7z8t:R, 7z8v:R, 7zbz:R
2 4a0c:F 80 85 0.8824 0.9375 0.8824 6.33e-49 8ij1:R, 7shk:R
3 7oni:R 86 84 0.4941 0.4884 0.5000 1.10e-25 2ecl:A, 6v9i:R
4 5a31:B 84 88 0.4000 0.4048 0.3864 5.47e-18 5g04:B, 5g05:B, 9gaw:C, 5jg6:A, 5jg6:D, 2mt5:A, 7qe7:C, 4r2y:A, 4r2y:B, 4r2y:C, 4r2y:D, 8s4g:C, 6tm5:B, 6tnt:B, 4ui9:B
5 8a3t:U 114 90 0.3294 0.2456 0.3111 1.06e-10 8a5y:U
6 2ep4:A 74 24 0.1647 0.1892 0.5833 1.88e-04
7 6w7z:B 71 22 0.1294 0.1549 0.5000 0.001 6w9a:B, 6w9a:D, 6w9d:B, 6w9d:E, 6w9d:H
8 1x4j:A 75 22 0.1294 0.1467 0.5000 0.002
9 4v3k:C 75 22 0.1294 0.1467 0.5000 0.003 7ojx:A, 4v3k:F, 4v3l:C
10 1iym:A 55 47 0.1882 0.2909 0.3404 0.003
11 6a3z:A 56 21 0.1176 0.1786 0.4762 0.034
12 1chc:A 68 22 0.1294 0.1618 0.5000 0.039
13 7t92:C 317 26 0.1294 0.0347 0.4231 0.045
14 5din:B 124 30 0.1176 0.0806 0.3333 0.073 5din:A
15 5zbu:A 74 23 0.1294 0.1486 0.4783 0.085 5zbu:D, 5zc4:A, 5zc4:D
16 2ect:A 78 22 0.1294 0.1410 0.5000 0.10
17 6f98:A 78 22 0.0941 0.1026 0.3636 0.19
18 2kiz:A 69 30 0.1412 0.1739 0.4000 0.30 5lg0:A, 5lg7:A, 7p2k:A
19 2l0b:A 91 22 0.1176 0.1099 0.4545 0.32
20 2c53:A 228 36 0.1529 0.0570 0.3611 0.46 2c56:A, 1lau:E, 1udh:A
21 7r70:A 150 44 0.1529 0.0867 0.2955 0.98 5d0i:A, 5d0i:B, 5d0k:C, 5d0k:F, 5d0k:I, 5d0k:L, 7r70:B, 7r71:A
22 7uhy:D 288 54 0.1882 0.0556 0.2963 1.2
23 2lxh:C 58 21 0.1059 0.1552 0.4286 1.3 2lxp:C
24 5d0m:C 60 41 0.1412 0.2000 0.2927 1.5 5ulh:C, 5ulk:C
25 8adl:A 633 23 0.1176 0.0158 0.4348 1.7 8adl:I
26 4lad:B 69 21 0.1059 0.1304 0.4286 1.7
27 4orh:H 142 22 0.1059 0.0634 0.4091 2.3 4ayc:A, 4ayc:B, 4orh:C, 4orh:G, 4orh:K, 4orh:L, 4whv:C, 4whv:D, 4whv:I, 4whv:J
28 8aaf:e 1527 63 0.1882 0.0105 0.2540 3.1 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
29 7bvw:A 79 14 0.1059 0.1139 0.6429 3.4 7bvw:B
30 6wi7:A 206 22 0.1176 0.0485 0.4545 4.1 2ckl:A, 8grm:M, 2h0d:A, 7nd1:H, 8pp7:K, 8pp7:M, 4r8p:K, 4r8p:M, 3rpg:B, 6wi8:A, 6wi8:B
31 3kic:A 520 29 0.1412 0.0231 0.4138 4.4 3kic:B, 3kic:C, 3kic:D, 3kic:E, 3kic:F, 3kic:G, 3kic:H, 3kic:I, 3kic:J, 3kic:K, 3kic:L, 3kic:M, 3kic:N, 3kic:O, 3kic:P, 3kic:Q, 3kic:R, 3kic:S, 3kic:T, 3kie:A, 3kie:B, 3kie:C, 3kie:D, 3kie:E, 3kie:F, 3kie:G, 3kie:H, 3kie:I, 3kie:J, 3kie:K, 3kie:L, 3kie:M, 3kie:N, 3kie:O, 3kie:P, 3kie:Q, 3kie:R, 3kie:S, 3kie:T
32 5mwl:A 421 27 0.1176 0.0238 0.3704 5.7 5mw8:A, 5mwl:B, 5mwm:A
33 4rso:A 520 29 0.1412 0.0231 0.4138 8.6
34 7uhy:C 578 54 0.1647 0.0242 0.2593 9.8

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218