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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
REWKIIDSTLREGEQFEKANFSTQDKVEIAKALDEFGIEYIEVTTPVASPQSRKDAEVLASLGLKAKVVTHIQCRLDAAK
VAVETGVQGIDLLFGTSKYLDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPYVDRVGLADTV
GVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIGERNGITPLGGFLARMYTLQPE
YVRRKYKLEMLPELDRMVARMVGVEIPFNNYITGETAFSHKAGMHLKAIYINPEAYEPYPPEVFGVKGLHYGEEELHRVT
QHIKALADRGQLTLEELDRILREWITA

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3a9i:A 347 347 1.0000 1.0000 1.0000 0.0 2ztj:A, 2ztk:A, 2zyf:A
2 3ivt:B 400 374 0.5821 0.5050 0.5401 1.58e-135 3ivs:A, 3ivs:B, 3ivt:A, 3ivu:A, 3ivu:B, 3mi3:A, 3mi3:B
3 6ktq:A 399 314 0.3256 0.2832 0.3599 4.13e-48 6ktq:B
4 6e1j:A 409 333 0.2680 0.2274 0.2793 1.29e-24 6e1j:B
5 3bli:A 311 319 0.2450 0.2733 0.2665 1.43e-23 3ble:A, 3blf:A
6 4ov9:A 380 322 0.2421 0.2211 0.2609 8.90e-22 4ov4:A
7 3rmj:B 308 296 0.2450 0.2760 0.2872 8.94e-21 3rmj:A
8 2cw6:A 296 239 0.1873 0.2196 0.2720 5.54e-10 2cw6:B, 2cw6:C, 2cw6:D, 2cw6:E, 2cw6:F, 3mp3:A, 3mp3:B, 3mp3:C, 3mp3:D, 3mp3:E, 3mp3:F, 3mp5:B, 3mp5:C
9 6nds:A 305 224 0.1527 0.1738 0.2366 1.88e-09
10 4lrs:A 337 239 0.1758 0.1810 0.2552 1.15e-07 4lrt:A, 4lrt:C
11 8ih7:A 340 248 0.1729 0.1765 0.2419 8.38e-06 8ih7:C
12 1rqb:A 472 75 0.0634 0.0466 0.2933 3.44e-05 1rqe:A, 1rqh:A, 1rr2:A, 1s3h:A, 1u5j:A
13 4jn6:C 339 259 0.1758 0.1799 0.2355 9.48e-05 4jn6:A
14 3fig:B 577 251 0.1988 0.1196 0.2749 2.05e-04 3fig:A, 3hps:A, 3hps:B, 3hpz:A, 3hpz:B, 3hq1:A, 3hq1:B, 1sr9:A, 1sr9:B, 3u6w:A, 3u6w:B
15 2nx9:B 453 65 0.0692 0.0530 0.3692 3.78e-04 2nx9:A
16 1nvm:A 340 254 0.1671 0.1706 0.2283 5.06e-04 1nvm:C, 1nvm:E, 1nvm:G
17 4hnv:B 1033 175 0.1182 0.0397 0.2343 0.002 8gk8:D
18 3bg5:B 1074 175 0.1182 0.0382 0.2343 0.002 3bg5:D, 8gk8:C, 3hb9:B, 3hb9:D, 3hbl:B, 3hbl:D, 4hnt:B, 4hnt:D, 4hnu:B, 4hnu:D, 4hnv:D, 3ho8:A, 3ho8:C, 3ho8:B
19 3ho8:D 934 175 0.1182 0.0439 0.2343 0.002
20 3bg5:A 1137 175 0.1182 0.0361 0.2343 0.002 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C
21 2qf7:B 1017 97 0.0749 0.0256 0.2680 0.003 3tw7:A, 3tw7:B
22 3tw6:B 1129 97 0.0749 0.0230 0.2680 0.003 4jx4:A, 4jx4:B, 4jx4:C, 4jx4:D, 4jx5:A, 4jx5:B, 4jx5:C, 4jx5:D, 4jx6:A, 4jx6:B, 4jx6:C, 4jx6:D, 4loc:A, 4loc:B, 4loc:C, 4loc:D, 4m6v:A, 4m6v:B, 4m6v:C, 4m6v:D, 4mfd:A, 4mfd:B, 4mfd:C, 4mfd:D, 4mfe:A, 4mfe:B, 4mfe:C, 4mfe:D, 4mim:A, 4mim:B, 4mim:C, 4mim:D, 3tw6:C, 3tw6:D
23 2qf7:A 1076 97 0.0749 0.0242 0.2680 0.003 3tw6:A
24 1ydn:A 283 239 0.1671 0.2049 0.2427 0.046 1ydn:B, 1ydn:C, 1ydn:D
25 6k5p:A 531 155 0.1037 0.0678 0.2323 0.61 6k5p:B, 6k5p:C, 6k5p:D
26 6nvw:B 527 44 0.0432 0.0285 0.3409 1.1
27 8hwl:A 941 159 0.1037 0.0383 0.2264 2.8 8hwl:B, 8hwl:C, 8hwl:E
28 7r3b:C 371 42 0.0490 0.0458 0.4048 2.9 7r3b:A, 7r3b:B, 7r3b:D, 7r3b:E, 7r3b:F, 7r3b:G, 7r3b:H
29 3jb9:F 82 62 0.0403 0.1707 0.2258 3.2 3jb9:f
30 6ytt:C 630 99 0.0807 0.0444 0.2828 3.2 6ytt:B, 6yu9:A, 6yu9:B, 6yu9:C, 6yu9:D, 6yua:B, 6yua:C
31 7wtb:B 1147 159 0.1037 0.0314 0.2264 3.5 3bg3:A, 3bg3:B, 3bg3:C, 3bg3:D, 3bg9:A, 3bg9:B, 3bg9:C, 3bg9:D, 8j7o:A, 8j7o:B, 8j7o:C, 8j7o:E, 7wta:C, 7wta:B, 7wta:D, 7wta:A, 7wtb:C, 7wtb:A, 7wtb:D, 7wtc:C, 7wtc:A, 7wtc:B, 7wtc:D, 7wtd:C, 7wtd:D, 7wte:C, 7wte:D
32 2ox4:C 397 101 0.0980 0.0856 0.3366 4.5 2ox4:A, 2ox4:B, 2ox4:D, 2ox4:E, 2ox4:F, 2ox4:G, 2ox4:H
33 7qrm:C 285 39 0.0375 0.0456 0.3333 6.7 1ctm:A, 1hcz:A, 2pcf:B, 7qrm:K, 6rqf:K, 6rqf:C, 1tkw:B, 7zyv:C, 7zyv:K
34 7yg7:A 414 57 0.0519 0.0435 0.3158 10.0 7yg7:B, 7yg7:C, 7yg7:D, 7yg7:E, 7yg7:F, 7yg7:G, 7yg7:H, 7yg7:I, 7yg7:J, 7yg7:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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