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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RETESWKLLESSIIYYEGNPIGTVAAQDPELAALNYDQCFLRDFVPSAFVFLMDGQTDIVRNFLIETLTLQSHEKEMDCF
QPGAGLMPASFKVESDGSKEYLVADFGEKAIARVPPVDSCMWWILLLRAYEKATGDLTLAREPKFQAGIKLILDLCLAHR
FSMYPTMLVPDGAFMIDRRMGVYEHPLEIQVLFYAALRAARELLLPDGDGEQYLNKVHGRLGALQYHIRNYYWVDLKRLR
EIYRYKGNEFGKEIANKFNIFSQSIPDWVIEWLPEKGGYLAGNLGPGRMDFRFFALGNLMAILAGLASEEESQRIMNLFA
HRWEDLIGYMPVKICYPALQGLEWQIVTGCDPKNIPWSYHNGGNWPVLLWLFTAAALKTGKVELAHEAIAIAEGRLSNDK
FPEYYDGNNGRLIGKEARIYQTWSIAGLLVAKQFLANPDHVEFIS

The query sequence (length=445) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5goo:A 447 445 1.0000 0.9955 1.0000 0.0 5goo:B, 5goo:C, 5gop:A, 5gop:C, 5gop:B, 5goq:A, 5goq:B, 5goq:C
2 5z74:A 441 445 0.6135 0.6190 0.6135 0.0 5z74:B
3 6g3n:A 445 74 0.0517 0.0517 0.3108 0.075 6g3n:B, 5ohz:A, 5ohz:B, 5ohz:C, 5ohz:D, 5oi0:A, 5oi0:B, 5oi1:A, 5oi1:B, 5oie:A, 5oie:B, 5oiv:A, 5oiv:B, 5oiw:A, 5oiw:B, 5oj4:A, 5oj4:B, 5oju:A, 5oju:B, 5ojv:A, 5ojv:B, 5ont:A, 5ont:B, 5onz:A, 5onz:B, 5oo2:A, 5oo2:B
4 2e9l:A 466 56 0.0382 0.0365 0.3036 1.3 2e9m:A, 3vkk:A, 2zox:A
5 3glv:B 122 34 0.0270 0.0984 0.3529 3.4
6 2vd8:A 387 68 0.0427 0.0491 0.2794 6.4 2vd8:B, 2vd9:A, 2vd9:B
7 1htn:A 156 51 0.0382 0.1090 0.3333 6.7 1tn3:A
8 4zlf:A 785 34 0.0270 0.0153 0.3529 8.9 4zlg:A, 4zli:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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