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BioLiP
>protein
RERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQ

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 9b8u:B 66 60 1.0000 0.9091 1.0000 9.80e-39 9b8u:A, 9b8u:C, 9b8u:D
2 3a01:F 61 57 0.6333 0.6230 0.6667 3.11e-23 3a01:B, 3lnq:A
3 8osb:E 62 56 0.6333 0.6129 0.6786 5.84e-23
4 1fjl:A 65 57 0.6000 0.5538 0.6316 2.30e-22 1fjl:B, 1fjl:C
5 3cmy:A 60 57 0.6000 0.6000 0.6316 1.73e-20
6 2lkx:A 68 56 0.5667 0.5000 0.6071 4.57e-19
7 8ejo:A 56 53 0.4833 0.5179 0.5472 1.62e-15 8ejo:B, 8ejp:A, 8ejp:B
8 6e8c:A 135 53 0.4500 0.2000 0.5094 2.20e-12 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
9 6e8c:A 135 57 0.4167 0.1852 0.4386 1.96e-10 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
10 1jgg:A 57 57 0.4833 0.5088 0.5088 8.08e-12 1jgg:B
11 8eml:A 58 57 0.4167 0.4310 0.4386 1.80e-10 8eml:B
12 2h1k:B 60 57 0.4000 0.4000 0.4211 1.40e-09 2h1k:A
13 1ig7:A 58 55 0.3833 0.3966 0.4182 3.78e-09
14 2me6:A 71 53 0.4000 0.3380 0.4528 3.81e-09
15 1zq3:P 68 60 0.4000 0.3529 0.4000 8.17e-09
16 8pna:A 67 57 0.3500 0.3134 0.3684 1.17e-08 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
17 3a01:A 78 55 0.3833 0.2949 0.4182 2.78e-08 3a01:E
18 5hod:A 61 53 0.3833 0.3770 0.4340 4.29e-08 5hod:D
19 4rdu:D 62 56 0.3333 0.3226 0.3571 4.58e-08 4rdu:A, 4xrs:I, 4xrs:G
20 1b72:A 68 51 0.3833 0.3382 0.4510 1.16e-07
21 2r5z:A 75 59 0.3667 0.2933 0.3729 2.41e-07 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
22 4uus:A 67 57 0.3667 0.3284 0.3860 6.58e-07 4uus:E
23 6es3:K 72 54 0.3500 0.2917 0.3889 8.08e-07 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
24 1ahd:P 68 57 0.3667 0.3235 0.3860 8.93e-07
25 2ld5:A 67 53 0.3167 0.2836 0.3585 3.13e-06
26 4cyc:A 66 57 0.3667 0.3333 0.3860 4.59e-06 1b8i:A
27 1puf:A 77 56 0.3667 0.2857 0.3929 7.07e-06 2lp0:A
28 3rkq:A 58 53 0.3000 0.3103 0.3396 7.72e-06 3rkq:B
29 1nk2:P 77 53 0.3333 0.2597 0.3774 1.68e-05 1nk3:P
30 6m3d:C 108 56 0.3000 0.1667 0.3214 1.97e-05 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
31 6m3d:C 108 53 0.2833 0.1574 0.3208 1.12e-04 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
32 5eea:G 63 53 0.2667 0.2540 0.3019 5.18e-05 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
33 5flv:M 229 52 0.3000 0.0786 0.3462 9.19e-05 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
34 3d1n:I 150 49 0.3333 0.1333 0.4082 1.23e-04 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
35 5zjr:A 64 59 0.3333 0.3125 0.3390 1.44e-04 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
36 8ik5:C 67 56 0.3500 0.3134 0.3750 2.60e-04 8ike:C, 8ilw:C
37 4qtr:C 57 54 0.2667 0.2807 0.2963 3.19e-04 4qtr:A, 4qtr:B, 4qtr:D
38 4rbo:A 55 52 0.2667 0.2909 0.3077 0.001 4rbo:D
39 3l1p:A 147 55 0.3000 0.1224 0.3273 0.002 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
40 8bx1:A 127 42 0.2500 0.1181 0.3571 0.003
41 8g8e:X 140 53 0.3000 0.1286 0.3396 0.008 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
42 1lfu:P 82 60 0.3167 0.2317 0.3167 0.009 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
43 4egc:A 539 42 0.2500 0.0278 0.3571 0.017
44 4j19:A 77 64 0.3333 0.2597 0.3125 0.020 4j19:B
45 1le8:A 53 42 0.2500 0.2830 0.3571 0.031 1akh:A, 1yrn:A
46 5wc9:A 136 49 0.2833 0.1250 0.3469 0.063 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
47 1gt0:C 137 40 0.2333 0.1022 0.3500 0.16 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
48 5ft8:A 401 39 0.2500 0.0374 0.3846 0.29 5ft4:A, 5ft4:B, 5ft5:A, 5ft5:B, 5ft6:A, 5ft6:B, 5ft8:C, 5ft8:E, 5ft8:G, 5ft8:I, 5ft8:K, 5ft8:M, 5ft8:O, 4lw2:A, 4lw2:B, 4lw2:C, 4lw4:A, 4lw4:B
49 7xrc:C 134 40 0.2500 0.1119 0.3750 0.76 2xsd:C
50 6c90:A 694 40 0.2333 0.0202 0.3500 1.2
51 6d6q:M 709 40 0.2333 0.0197 0.3500 1.2 6d6r:M, 7z52:B
52 6ieg:A 872 40 0.2333 0.0161 0.3500 1.5
53 6ro1:A 919 40 0.2333 0.0152 0.3500 1.7
54 6ieh:B 929 40 0.2333 0.0151 0.3500 1.8 6ieg:B, 7s7b:A, 7s7b:E, 7s7c:A
55 1hlv:A 131 36 0.2000 0.0916 0.3333 3.3
56 6b04:A 341 26 0.1333 0.0235 0.3077 3.4 6b04:B, 6b04:C, 6b06:A, 6b06:B, 6b06:C, 6b07:A, 6b07:B, 6b07:C
57 8of7:B 119 33 0.1667 0.0840 0.3030 4.3
58 1pcx:A 745 35 0.2333 0.0188 0.4000 4.6 1pd0:A, 1pd1:A
59 4a4z:A 874 28 0.1833 0.0126 0.3929 4.9
60 7xoi:A 465 37 0.2167 0.0280 0.3514 5.2 7xoi:C, 7xoi:E, 7xoi:G, 7xoi:I, 7xoi:K, 7xoi:M, 7xoi:O
61 6zga:B 786 35 0.2333 0.0178 0.4000 5.3 4bzi:E, 4bzi:L, 4bzi:M, 6gni:E, 1m2v:B, 6zga:F
62 8q9t:A 1075 28 0.1833 0.0102 0.3929 5.9
63 5w7k:A 274 38 0.2000 0.0438 0.3158 7.1 5w7k:B
64 7odv:DDD 595 31 0.1500 0.0151 0.2903 8.1 7odv:AAA, 7ogo:AAA, 7ogo:DDD, 7ogq:AAA, 7ogu:AAA, 7ogu:DDD, 7ogu:GGG, 7ogu:JJJ, 7ogz:AAA, 7ogz:DDD
65 9bf5:C 1190 43 0.1667 0.0084 0.2326 8.7 9bf5:D, 9c6q:C
66 8u0w:A 1099 43 0.1667 0.0091 0.2326 8.9
67 8u3k:A 1150 43 0.1667 0.0087 0.2326 9.0 9ezy:A, 8u3k:F
68 4ly4:A 290 19 0.1667 0.0345 0.5263 9.0 4ly4:B, 4ly4:C, 4ly4:D, 3qbu:A, 3qbu:B, 3qbu:C, 3qbu:D
69 8u0u:A 1126 43 0.1667 0.0089 0.2326 9.0 8u0u:F
70 7dge:A 784 39 0.2000 0.0153 0.3077 9.3 1ewk:A, 1ewk:B, 1isr:A, 1iss:A, 1iss:B, 3ks9:A, 3ks9:B
71 1esm:A 311 52 0.2500 0.0482 0.2885 9.5 1esm:B, 1esm:C, 1esm:D, 1esn:A, 1esn:B, 1esn:C, 1esn:D, 4f7w:A, 4f7w:C, 4f7w:B, 4f7w:D, 4f7w:E, 4f7w:F, 4f7w:G, 4f7w:H, 4gi7:A, 4gi7:C, 4gi7:B, 4gi7:D, 4gi7:E, 4gi7:F, 4gi7:G, 4gi7:H, 4ne2:A, 4ne2:B, 1sq5:A, 1sq5:B, 1sq5:C, 1sq5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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