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BioLiP
>protein
RELKPQTCTICETTPVNAIDAEMHDLNCSYNICPYCASRLTSDGLARHVTQCPKRKEKVEETELYLNLERIPWVVRK

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2l7x:A 77 77 1.0000 1.0000 1.0000 1.14e-53
2 8w2o:B 178 38 0.1818 0.0787 0.3684 1.7
3 1e4u:A 78 69 0.2727 0.2692 0.3043 2.0 1ur6:B
4 3cvg:A 270 27 0.1039 0.0296 0.2963 3.7 3cvg:B, 3cvg:C, 3cvg:D
5 8fgw:C 1342 61 0.1818 0.0104 0.2295 5.0 8fh3:C
6 1wjp:A 107 51 0.1818 0.1308 0.2745 5.8
7 2vrd:A 61 33 0.1558 0.1967 0.3636 6.5 4pjo:L, 4pjo:l, 4pjo:M, 4pjo:m, 6qx9:1C, 7vpx:N
8 2w8h:A 322 36 0.1688 0.0404 0.3611 6.9 2w8h:B, 2w8h:C, 2w8h:D, 2w8h:E, 2w8h:F, 2w8h:G, 2w8h:H
9 4orh:H 142 46 0.1688 0.0915 0.2826 8.4 4ayc:A, 4ayc:B, 4orh:C, 4orh:G, 4orh:K, 4orh:L, 4whv:C, 4whv:D, 4whv:I, 4whv:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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