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BioLiP
>protein
RDLKTYLSVAPVASTLWFAALAGLLIEINRLFPDALTFPFF

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5l8r:J 42 41 0.9756 0.9524 0.9756 5.00e-23 7dkz:J, 6ly5:j, 4rku:J, 4xk8:J, 4xk8:j, 4y28:J, 6yac:J, 6yez:J, 6zoo:J, 6zxs:J
2 8bcv:J 43 41 0.9024 0.8605 0.9024 1.24e-21 7ew6:J, 7ewk:J, 7f9o:J, 7f9o:m, 8j6z:J, 8j7a:J, 8j7b:J, 3lw5:J, 2o01:J, 7wfd:AJ, 7wfe:BJ, 7wg5:AJ, 7wg5:BJ, 8wgh:J, 2wsc:J, 2wse:J, 2wsf:J, 5zji:J
3 8htu:J 41 39 0.7073 0.7073 0.7436 1.61e-15 7ksq:J, 7kux:J, 6l35:J, 7xqp:J
4 7d0j:J 41 40 0.6341 0.6341 0.6500 3.55e-13 7bgi:J, 7blx:J, 7dz7:J, 7dz8:J, 8h2u:J, 6ijj:J, 6ijo:J, 6jo5:J, 6jo6:J, 7r3k:J, 7wyi:J, 7wzn:J, 7zq9:J, 7zqc:J, 7zqd:J, 7zqd:J2
5 7yca:J 41 39 0.5610 0.5610 0.5897 5.22e-13
6 6kif:J 41 37 0.5610 0.5610 0.6216 1.51e-10 6kif:T, 6kif:l, 6kig:J, 6kig:T, 6kig:l
7 7blz:J 38 35 0.5366 0.5789 0.6286 1.99e-10 6fos:J, 8wey:J, 5zgb:J, 5zgh:J
8 6igz:J 41 40 0.5122 0.5122 0.5250 2.96e-10
9 8cmo:J 40 38 0.5366 0.5500 0.5789 4.22e-10
10 7a4p:J 41 40 0.5854 0.5854 0.6000 4.54e-10 6zzx:J, 6zzy:J
11 6qph:J 41 40 0.5610 0.5610 0.5750 8.04e-10 6rhz:J, 6sl5:J, 6yxr:J
12 6l4u:J 41 40 0.4878 0.4878 0.5000 7.81e-09
13 7y5e:JN 38 33 0.4878 0.5263 0.6061 2.32e-08 7y5e:J2, 7y7a:J7, 7y7a:Jo
14 6k61:J 45 37 0.4878 0.4444 0.5405 3.23e-08 6jeo:aJ, 6jeo:bJ, 6jeo:cJ, 6jeo:dJ, 6k61:j, 6tcl:J1, 6tcl:J2, 6tcl:J, 6tcl:JJ, 7y3f:J
15 4fe1:J 41 39 0.4634 0.4634 0.4872 4.63e-08 7fix:J1, 7fix:J2, 7fix:J3, 1jb0:J, 6k33:aJ, 6k33:bJ, 6k33:cJ, 7m75:J, 7m76:J, 7m78:J, 3pcq:J, 6pfy:J, 6pfy:S, 6pfy:f, 6pgk:J, 6pgk:S, 6pgk:f, 6tra:J, 6trc:J, 6trc:j, 6trc:8, 6trd:J, 6trd:j, 6trd:8, 5zf0:J1, 5zf0:J2, 5zf0:J3, 5zf0:J4, 5zf0:J6, 5zf0:J5
16 8wm6:J 42 34 0.4634 0.4524 0.5588 2.15e-07 8wmj:J, 8wmv:J, 8wmw:J, 7y7b:J, 7y8a:J
17 7dr0:J 37 34 0.5366 0.5946 0.6471 2.70e-07 7dr1:J, 7dr2:aJ, 7dr2:bJ, 7dr2:cJ, 7dr2:dJ
18 7coy:aJ 35 34 0.4146 0.4857 0.5000 1.04e-06 7coy:bJ, 7coy:cJ
19 6vpv:J 39 39 0.4878 0.5128 0.5128 3.46e-06 6vpv:j, 6vpv:8
20 4l6v:F 125 37 0.4146 0.1360 0.4595 0.004 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
21 7s3d:J 41 29 0.2927 0.2927 0.4138 0.010 7s3d:S, 7s3d:j
22 7qco:q 37 34 0.3902 0.4324 0.4706 0.045 7qco:j
23 8jw0:j 70 38 0.4146 0.2429 0.4474 0.33
24 8jze:j 98 36 0.3415 0.1429 0.3889 1.7 8jzf:j
25 8jjr:j 99 39 0.3902 0.1616 0.4103 2.7
26 7sf2:A 586 29 0.2683 0.0188 0.3793 3.3 7sf2:B, 7sf2:C, 7sf2:D, 7sf2:E, 7sf2:F
27 8eg0:A 230 15 0.2195 0.0391 0.6000 4.2 3ckk:A, 8cth:A, 8cti:A, 8d59:A, 8d5b:A, 8d9l:A, 7ogj:A, 7ogj:B, 7pl1:A
28 6qxn:A 376 31 0.2927 0.0319 0.3871 5.9 7oqx:A, 6q52:A
29 5nqv:C 190 15 0.2439 0.0526 0.6667 8.9 5nqv:A, 5nqv:B, 5nqv:D
30 2ohh:A 403 14 0.1707 0.0174 0.5000 9.7 2ohh:B, 2ohh:D, 2ohh:E, 2ohi:A, 2ohi:B, 2ohi:D, 2ohi:E, 2ohi:G, 2ohi:H, 2ohi:I, 2ohi:J, 2ohj:A, 2ohj:B, 2ohj:D, 2ohj:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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