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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RDLKEERFVIDTSIFTNTDVYILFGRTPTTALKNFLKLISKLKGTNFYMPPSIYEELMNFIDSDKIPKDLQIKIFQKPPK
KHEMEVPAFLLYELIEDVRHRIDKGLRVAEQAVRNEPETITNLRKKYRSALREGIIDSKEDVDLILLAKEMDGILVTADT
GIMTWADKMGIRFVESRNLRGIINSLIKM

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7e8o:A 194 194 1.0000 0.9742 0.9742 1.96e-135 7e8o:B, 7e8o:C, 7e8o:D
2 8kd9:C 189 187 0.4233 0.4233 0.4278 3.06e-53 8kd9:E, 8kd9:G, 8kd9:H, 8kd9:D, 8kd9:F, 8kd9:J, 8kd9:I, 8kd9:A
3 8kda:E 189 187 0.4286 0.4286 0.4332 4.81e-50 8kda:G, 8kda:H, 8kda:F, 8kda:C, 8kda:D, 8kda:I, 8kda:J, 8kda:K, 8kda:A
4 6xeo:A 1118 70 0.1058 0.0179 0.2857 0.72
5 6x2f:A 1144 70 0.1058 0.0175 0.2857 0.77 7ssg:A, 6x26:A, 6x2n:A, 6x43:A, 6x4w:A, 6x4y:A, 6x50:A
6 2lcq:A 161 51 0.0899 0.1056 0.3333 1.1
7 2ogj:A 379 96 0.1323 0.0660 0.2604 3.0 2ogj:B, 2ogj:C, 2ogj:D, 2ogj:E, 2ogj:F
8 8adl:A 633 92 0.1323 0.0395 0.2717 3.4 8adl:I
9 3wem:A 830 23 0.0582 0.0133 0.4783 4.9 3w37:A, 3wel:A, 3wen:A, 3weo:A
10 6hiv:Cb 252 25 0.0529 0.0397 0.4000 5.4 6hiw:Cb, 6hiy:Cb, 7pub:Cb, 6sga:Cb, 6sgb:Cb
11 7aor:p 242 25 0.0529 0.0413 0.4000 5.6
12 5hzw:A 668 128 0.1376 0.0389 0.2031 6.0 5i04:A
13 1bru:P 241 19 0.0423 0.0332 0.4211 6.2
14 6h57:A 795 43 0.0741 0.0176 0.3256 6.7
15 7d63:RZ 839 43 0.0741 0.0167 0.3256 7.0 7d4i:RZ, 7d5t:RZ, 7mqj:A
16 6n2n:A 572 92 0.1217 0.0402 0.2500 7.4 6n2n:C, 6n2o:A, 6n2o:C
17 7aju:JD 811 43 0.0741 0.0173 0.3256 7.8 6zqd:JD, 6zqe:JD, 6zqf:JD
18 4kn7:X 517 85 0.1164 0.0426 0.2588 8.2
19 4czw:A 609 73 0.0899 0.0279 0.2329 8.5
20 6zqg:JD 829 43 0.0741 0.0169 0.3256 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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