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BioLiP
>protein
RDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKAAEQKVA

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8tfu:A 70 69 1.0000 0.9857 1.0000 1.17e-45 8tfu:B, 8tg7:A, 8tg7:B, 8tg8:A, 8tgc:B, 8tgc:A
2 7b39:A 240 61 0.3043 0.0875 0.3443 1.1 7bns:A2, 7bnu:A2, 7bo6:A, 8ck5:A, 8ckc:A, 3dr1:A, 5e7v:A, 9eyr:A, 9ez1:A, 9ez2:A, 9fbf:A, 4fhh:A, 4fhi:A, 6fo7:A, 6fo8:1, 6fo9:A, 6fob:A, 6fod:A, 4g1d:A, 4g1y:A, 4g1z:A, 4g20:A, 4g21:A, 4g2h:A, 2hbh:A, 2hc4:A, 2hcd:A, 4ia1:A, 4ia2:A, 4ia3:A, 4ia7:A, 5lga:A, 5mx7:A1, 5nky:A, 5nma:A, 5nmb:A2, 3o1d:A, 3o1e:A, 5ow7:A, 5ow9:A, 5owd:A, 7oxu:A, 7oxz:A, 7oy4:A, 8p9w:A, 8p9x:A, 8pwd:A, 8pwe:A, 8pwf:A, 8pwm:A, 8pz6:A, 8pz7:A, 8pz8:A, 8pz9:A, 8pzb:A, 4q0a:C, 4ruj:A, 4ruo:X, 4rup:A, 6t2m:A, 6xzh:A, 6xzi:A, 6xzj:A, 6xzk:A, 6xzv:A, 7zfg:A, 7zfx:A
3 6ha8:V 541 43 0.2319 0.0296 0.3721 4.3
4 7zgz:X 753 24 0.1449 0.0133 0.4167 4.5 8c7f:B
5 8c7f:A 772 24 0.1449 0.0130 0.4167 4.8 7zb3:A, 7zb3:B, 7zdy:W, 7zdy:Y, 7zgz:Y
6 8wo5:C6 315 36 0.1739 0.0381 0.3333 5.8 8wiw:Z, 8wiw:a, 8wiw:b, 8wiw:c, 8wiw:d, 8wiw:e, 8wiw:f, 8wiw:3, 8wiw:8, 8wiw:AM, 8wiw:AS, 8wiw:AY, 8wiw:Ae, 8wiw:Ak, 8wiw:Aq, 8wiw:Aw, 8wiw:A4, 8wiw:BA, 8wiw:BH, 8wiw:BO, 8wiw:BV, 8wiw:Bc, 8wiw:Bj, 8wiw:Bq, 8wiw:Bx, 8wiw:B5, 8wiw:CB, 8wiw:CI, 8wiw:CP, 8wiw:CW, 8wiw:Cd, 8wiw:Ck, 8wiw:Cr, 8wiw:Cy, 8wo5:DB, 8wo5:Em, 8wo5:DD, 8wo5:D7, 8wo5:DJ, 8wo5:DQ, 8wo5:DW, 8wo5:Dc, 8wo5:Di, 8wo5:Do, 8wo5:Du, 8wo5:D1, 8wo5:B5, 8wo5:By, 8wo5:EE, 8wo5:EK, 8wo5:EQ, 8wo5:EW, 8wo5:Ba, 8wo5:Bg, 8wo5:Bm, 8wo5:Bs, 8wo5:CA, 8wo5:CG, 8wo5:CM, 8wo5:CS, 8wo5:CY, 8wo5:Ce, 8wo5:Ck, 8wo5:Cq, 8wo5:Cw, 8wo5:Ea, 8wo5:Eg, 8woe:DG, 8woe:EC, 8woe:CB, 8woe:B5, 8woe:EJ, 8woe:EQ, 8woe:EX, 8woe:Bc, 8woe:Bj, 8woe:Bq, 8woe:Bx, 8woe:Ex, 8woe:CI, 8woe:CP, 8woe:CW, 8woe:Cd, 8woe:Ck, 8woe:Cr, 8woe:Cy, 8woe:Ey, 8woe:Ez, 8woe:E1, 8woe:E2, 8woe:E3, 8woe:E4, 8woe:C6, 8woe:DA, 8woe:DY, 8woe:De, 8woe:Dk, 8woe:Dq, 8woe:Dw, 8woe:D3, 8woe:D9, 8xp0:M, 8xp0:Y, 8xp0:S, 8xp1:Z, 8xp1:a, 8xp1:b, 8yjt:k, 8yjt:Cw, 8yjt:q, 8yjt:w, 8yjt:3, 8yjt:9, 8yjt:AE, 8yjt:AK, 8yjt:AQ, 8yjt:AW, 8yjt:Ac, 8yjt:Ai, 8yjt:Ao, 8yjt:Au, 8yjt:A1, 8yjt:A7, 8yjt:BC, 8yjt:BI, 8yjt:BO, 8yjt:BU, 8yjt:Ba, 8yjt:Bg, 8yjt:Bm, 8yjt:Bs, 8yjt:By, 8yjt:B5, 8yjt:CA, 8yjt:CG, 8yjt:CM, 8yjt:CS, 8yjt:CY, 8yjt:Ce, 8yjt:Ck, 8yjt:Cq
7 7oj2:A 353 27 0.1884 0.0368 0.4815 6.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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