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BioLiP
>protein
RDCRPVVRRARTSDVPAIKQLVDTYAGKILLEKNLVTLYEAVQEFWVAEHPDLYGKVVGCGALHVLWSDLGEIRTVAVDP
AMTGHGIGHAIVDRLLQVARDLQLQRVFVLTFETEFFARHGFTEIEGTPVTAEVFDEMCRSYDIGVAEFLDLSYVKPNIL
GNSRMLLVL

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yge:A 169 169 1.0000 1.0000 1.0000 1.58e-124 6add:A, 6add:B, 5yge:B, 5yo2:A, 5yo2:B
2 3b8g:A 424 119 0.2308 0.0920 0.3277 7.55e-11 3d2m:A, 3d2p:A, 3d2p:B, 4i49:A, 2r8v:A, 2r98:A
3 1i1d:D 161 55 0.0828 0.0870 0.2545 0.16 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
4 6ao7:A 153 95 0.1124 0.1242 0.2000 0.20
5 3icf:A 316 46 0.0888 0.0475 0.3261 0.48 3icf:B
6 7daj:B 150 52 0.0888 0.1000 0.2885 0.56 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
7 4e0u:A 408 128 0.1834 0.0760 0.2422 0.66 4e0u:B, 7xvj:A, 7xvj:B, 7xvj:C, 7xvj:D, 7y3v:A, 7y3v:B, 7y3v:C, 7y3v:D
8 3mgd:B 154 58 0.0710 0.0779 0.2069 0.73 3mgd:A
9 7ssf:A 72 44 0.0828 0.1944 0.3182 0.83 7ssf:C, 7ssf:E, 7ssf:G
10 5n8o:A 1432 36 0.0828 0.0098 0.3889 1.1 4l0j:A, 1p4d:A, 1p4d:B, 1p4d:C, 2q7t:A, 2q7t:B, 2q7u:A
11 3smz:A 280 93 0.1538 0.0929 0.2796 1.3
12 2a0i:A 293 28 0.0710 0.0410 0.4286 1.6
13 7ak7:A 154 62 0.1124 0.1234 0.3065 1.7 7ak7:B
14 1hqr:D 205 96 0.1420 0.1171 0.2500 2.0
15 5xxr:A 123 69 0.1065 0.1463 0.2609 2.6 5xxr:B, 5xxs:A, 5xxs:B
16 3pp9:A 176 75 0.0888 0.0852 0.2000 2.8 3pp9:B, 3pp9:C
17 3fm3:A 356 57 0.1006 0.0478 0.2982 3.1 3fm3:B, 3fmq:A, 3fmq:B, 3fmr:A, 3fmr:B
18 3dje:B 437 44 0.1006 0.0389 0.3864 5.9 3djd:A, 3djd:B, 3dje:A
19 4u82:A 236 40 0.0592 0.0424 0.2500 6.0 4h8e:A, 3wyi:A
20 3dr8:A 173 82 0.1302 0.1272 0.2683 6.5 3dr8:B
21 3afg:B 507 39 0.0947 0.0316 0.4103 7.0 3afg:A
22 8ssl:A 1072 83 0.1361 0.0215 0.2771 7.2 5cjt:A, 5cjt:B, 5cju:A, 5cju:B, 5cjv:A, 5cjv:B, 5cjw:A, 5cjw:B, 8ssl:B, 8ssl:C, 4xc6:A, 4xc6:B, 4xc7:A, 4xc8:A, 4xc8:B
23 6ncz:C 589 53 0.1065 0.0306 0.3396 9.4 6ncz:A, 6ncz:B, 6ncz:D, 6ncz:E, 6ncz:F
24 9bct:M 648 26 0.0651 0.0170 0.4231 9.5 9bct:J, 9bcu:J, 9bcu:M
25 7r4p:A 337 36 0.0651 0.0326 0.3056 9.9 7m2o:A, 2rdt:A, 2w0u:A, 2w0u:B, 2w0u:C, 2w0u:D, 6w44:A, 6w45:A, 6w4c:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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