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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RCPDCGSTELVEDSHYSQSQLVCSDCGCVVTEGVLTTTFSDEGNLREVTYSRSTGENEQVSRSQQRGLRRVRDLCRVLQL
PPTFEDTAVAYYQQAYRHSGIRAARLQKKEVLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVP
SLCLAELVKTYCSSFKLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQSLQPADRLSC
SLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLRVLRLDKRSVVKHIGDLLQHRQSLVRSAFRDLLLPPCMLKSP
KRICPVPPVSTVTGDENISDSEIEQYLRTPQEVRDFQRAQA

The query sequence (length=361) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ity:V 361 361 1.0000 1.0000 1.0000 0.0 8iue:V, 8iuh:V, 5n9g:A, 5n9g:F, 4roc:A, 4rod:A, 4roe:A
2 5iy6:M 260 231 0.1551 0.2154 0.2424 4.79e-11 8bvw:M, 8byq:M, 8bz1:M, 7edx:R, 7eg7:R, 7eg8:R, 7eg9:R, 7ega:R, 7egb:R, 7egc:R, 7ena:BA, 7enc:BA, 8gxq:BA, 8gxs:BA, 5iya:M, 7lbm:O, 7nvr:M, 7nvs:M, 7nvt:M, 7nvy:M, 7nvz:M, 7zwd:M, 7zx7:M
3 6cnb:R 522 230 0.1302 0.0900 0.2043 3.90e-09 8cen:O, 8ceo:O, 6cnc:R, 6cnd:R, 6cnf:R, 6eu0:Y, 6f40:U, 6f41:U, 6f42:U, 6f44:U, 8ffz:H, 5fmf:Q, 5fyw:O, 5fz5:O, 6gyk:O, 6gyl:O, 6gym:O, 7ml0:O, 7ml1:O, 7ml2:O, 7ml4:O, 1ngm:A, 1ngm:E, 1ngm:I, 1ngm:M, 1nh2:A, 7o4i:O, 7o4j:O, 7o72:O, 7o73:O, 7o75:O, 7oh9:K, 7oha:K, 7ohb:K, 5oqj:O, 5oqm:O, 7q5b:Y, 1rm1:A, 5sva:j, 4v1n:O, 4v1o:O, 1ytb:A, 1ytb:B, 1ytf:A, 7z7n:D, 7zb5:D, 7zb5:G, 7zs9:O, 7zsa:O, 7zsb:O
4 6eu0:Z 339 230 0.1274 0.1357 0.2000 5.20e-09 6f40:V, 6f41:V, 6f42:V, 6f44:V, 7q5b:Z
5 5iy7:M 310 269 0.1634 0.1903 0.2193 6.73e-09 1c9b:A, 1c9b:E, 1c9b:I, 1c9b:M, 1c9b:Q, 1dl6:A, 5iy8:M, 5iy9:M, 5iyb:M, 5iyc:M, 5iyd:M, 7nvu:M, 7nw0:M, 6o9l:M, 2phg:A, 1rly:A, 8s51:M, 8s52:M, 8s5n:M, 1vol:A, 8wak:R, 8wal:R, 8wan:R, 8wao:R, 8wap:R, 8waq:R, 8war:R, 8was:R, 7zwc:M, 7zx8:M, 7zxe:M
6 1d3u:B 201 154 0.1025 0.1841 0.2403 7.13e-06 1ais:B
7 8cen:M 310 262 0.1496 0.1742 0.2061 0.003 8ceo:M, 5fmf:P, 6gyk:M, 6gyl:M, 6gym:M, 7ml0:M, 7ml1:M, 7ml2:M, 7o4i:M, 7o4j:M, 7o72:M, 7o73:M, 7o75:M, 5oqj:M, 5oqm:M, 7zs9:M, 7zsa:M, 7zsb:M
8 7ml4:M 234 148 0.0942 0.1453 0.2297 0.005 5fyw:M, 5fz5:M
9 4v1n:M 299 204 0.1136 0.1371 0.2010 0.014 4bbr:M, 4bbs:M, 4v1o:M
10 1pft:A 50 34 0.0360 0.2600 0.3824 0.031
11 7jpx:A 1116 58 0.0499 0.0161 0.3103 2.6 8e56:A, 8e57:A, 8e58:A, 7jpk:A, 7jpl:A, 7jpv:A, 7jpw:A
12 6jp5:A 1274 58 0.0499 0.0141 0.3103 2.6 6jp8:A, 6jpa:A, 6jpb:A
13 1b8d:A 164 52 0.0416 0.0915 0.2885 5.7 1b8d:K, 5y6p:e2, 5y6p:g2, 5y6p:i2, 5y6p:k2, 5y6p:m2, 5y6p:o2, 5y6p:y2, 5y6p:q2, 5y6p:w2, 5y6p:s2, 5y6p:u2, 5y6p:W2, 5y6p:S2, 5y6p:E2, 5y6p:eE, 5y6p:O2, 5y6p:G2, 5y6p:I2, 5y6p:K2, 5y6p:M2, 5y6p:Q2, 5y6p:U2, 5y6p:Y2, 5y6p:A3, 5y6p:C3, 5y6p:E3, 5y6p:G3, 5y6p:I3, 5y6p:K3, 5y6p:M3, 5y6p:O3, 5y6p:Q3, 5y6p:W3, 5y6p:S3, 5y6p:U3, 5y6p:Y3, 5y6p:u3, 5y6p:s3, 5y6p:e3, 5y6p:eM, 5y6p:o3, 5y6p:g3, 5y6p:i3, 5y6p:k3, 5y6p:m3, 5y6p:q3, 5y6p:A4, 5y6p:w3, 5y6p:y3, 5y6p:C4, 5y6p:E4, 5y6p:K4, 5y6p:G4, 5y6p:I4, 5y6p:M4, 5y6p:O4, 5y6p:Q4, 5y6p:S4, 5y6p:U4, 5y6p:W4, 5y6p:Y4, 5y6p:m4, 5y6p:w4, 5y6p:o4, 5y6p:q4, 5y6p:s4, 5y6p:u4, 5y6p:y4, 5y6p:A5, 5y6p:G5, 5y6p:C5, 5y6p:E5, 5y6p:I5, 5y6p:K5, 5y6p:U5, 5y6p:M5, 5y6p:O5, 5y6p:Q5, 5y6p:S5, 5y6p:m5, 5y6p:w5, 5y6p:o5, 5y6p:q5, 5y6p:s5, 5y6p:u5, 5y6p:y5, 5y6p:i8, 5y6p:j8, 5y6p:aG, 5y6p:k8, 5y6p:l8, 5y6p:m8, 5y6p:A6, 5y6p:C6, 5y6p:E6, 5y6p:G6, 5y6p:I6, 5y6p:K6, 5y6p:M6, 5y6p:O6, 5y6p:Q6, 5y6p:S6, 5y6p:U6, 5y6p:W6, 5y6p:Y6, 5y6p:i6, 5y6p:h6, 5y6p:g6, 5y6p:f6, 5y6p:j6, 5y6p:k6, 5y6p:m6, 5y6p:o6, 5y6p:q6, 5y6p:s6, 5y6p:u6, 5y6p:w6, 5y6p:r8, 5y6p:q8, 5y6p:s8, 5y6p:t8, 5y6p:u8, 5y6p:A7, 5y6p:C7, 5y6p:E7, 5y6p:G7, 5y6p:I7, 5y6p:K7, 5y6p:M7, 5y6p:O7, 5y6p:Q7, 5y6p:S7, 5y6p:U7, 5y6p:W7, 5y6p:Y7, 5y6p:i7, 5y6p:f7, 5y6p:g7, 5y6p:h7, 5y6p:j7, 5y6p:k7, 5y6p:m7, 5y6p:o7, 5y6p:q7, 5y6p:s7, 5y6p:u7, 5y6p:w7, 5y6p:v8, 5y6p:B8, 5y6p:x8, 5y6p:z8, 5y6p:D8, 5y6p:F8, 5y6p:P8, 5y6p:H8, 5y6p:J8, 5y6p:L8, 5y6p:N8, 5y6p:m9, 5y6p:o9, 5y6p:q9, 5y6p:s9, 5y6p:u9, 5y6p:w9, 5y6p:y9, 5y6p:A9, 5y6p:G9, 5y6p:C9, 5y6p:E9, 5y6p:I9, 5y6p:K9, 5y6p:U9, 5y6p:M9, 5y6p:O9, 5y6p:Q9, 5y6p:S9, 5y6p:am, 5y6p:ao, 5y6p:aq, 5y6p:as, 5y6p:au, 5y6p:aw, 5y6p:ay, 5y6p:aA, 5y6p:aC, 5y6p:aE, 5y6p:aI, 5y6p:aK, 5y6p:aM, 5y6p:aO, 5y6p:aQ, 5y6p:aS, 5y6p:aU, 5y6p:bm, 5y6p:bt, 5y6p:bu, 5y6p:bv, 5y6p:bw, 5y6p:bx, 5y6p:by, 5y6p:bA, 5y6p:bC, 5y6p:bE, 5y6p:bG, 5y6p:bI, 5y6p:cy, 5y6p:bK, 5y6p:bM, 5y6p:bO, 5y6p:bQ, 5y6p:bS, 5y6p:bU, 5y6p:cm, 5y6p:ct, 5y6p:cv, 5y6p:cu, 5y6p:cw, 5y6p:cx, 5y6p:cA, 5y6p:cG, 5y6p:cC, 5y6p:dE, 5y6p:cD, 5y6p:cI, 5y6p:cK, 5y6p:cS, 5y6p:cU, 5y6p:cT, 5y6p:cX, 5y6p:cV, 5y6p:dS, 5y6p:cW, 5y6p:cZ, 5y6p:da, 5y6p:db, 5y6p:dc, 5y6p:de, 5y6p:dg, 5y6p:dk, 5y6p:dm, 5y6p:do, 5y6p:dq, 5y6p:ds, 5y6p:du, 5y6p:dA, 5y6p:dC, 5y6p:dG, 5y6p:dI, 5y6p:dJ, 5y6p:dM, 5y6p:dW, 5y6p:dO, 5y6p:dQ, 5y6p:dU, 5y6p:ed, 5y6p:dZ, 5y6p:ea, 5y6p:ej, 5y6p:ef, 5y6p:eh, 5y6p:ek, 5y6p:eu, 5y6p:em, 5y6p:es, 5y6p:eo, 5y6p:eq, 5y6p:eA, 5y6p:eK, 5y6p:eC, 5y6p:eG, 5y6p:eI, 5y6p:eO, 5y6p:eU, 5y6p:eQ, 5y6p:eS, 5y6p:eW, 5y6p:la, 5y6p:lc, 5y6p:le, 5y6p:lg, 5y6p:li, 5y6p:lk, 5y6p:lm, 5y6p:lo, 5y6p:lq, 5y6p:ls, 5y6p:lu, 5y6p:lw, 5y6p:fb, 5y6p:fe, 5y6p:fg, 5y6p:fl, 5y6p:fh, 5y6p:fk, 5y6p:fn, 5y6p:fp, 5y6p:fr, 5y6p:ft, 5y6p:fv, 5y6p:fx, 5y6p:gl, 5y6p:gb, 5y6p:gc, 5y6p:gf, 5y6p:gh, 5y6p:gj, 5y6p:gm, 5y6p:go, 5y6p:gq, 5y6p:gs, 5y6p:gu, 5y6p:gw, 5y6p:hA, 5y6p:hC, 5y6p:hE, 5y6p:hF, 5y6p:hI, 5y6p:hK, 5y6p:hM, 5y6p:hO, 5y6p:hQ, 5y6p:hS, 5y6p:hU, 5y6p:hW, 5y6p:iA, 5y6p:iB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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