Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGG
PCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCG
AGCQSGGCDG

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4aml:A 171 170 0.9529 0.9474 0.9529 2.76e-106 4aml:B, 2cwg:B, 2cwg:A, 1wgc:A, 1wgc:B, 2wgc:B, 2x3t:A, 2x3t:B, 2x3t:C, 2x3t:D, 2x52:A, 2x52:B
2 6sto:A 165 168 0.6647 0.6848 0.6726 2.71e-64 6sto:B, 6stp:A, 6stp:B
3 6sto:A 165 126 0.4176 0.4303 0.5635 5.73e-36 6sto:B, 6stp:A, 6stp:B
4 1uha:A 82 79 0.2471 0.5122 0.5316 9.20e-18
5 1uha:A 82 78 0.2294 0.4756 0.5000 1.45e-16
6 1uha:A 82 36 0.1000 0.2073 0.4722 8.66e-04
7 4wp4:A 43 31 0.1353 0.5349 0.7419 3.12e-09
8 4wp4:A 43 33 0.1235 0.4884 0.6364 1.93e-06
9 4wp4:A 43 31 0.1059 0.4186 0.5806 3.06e-05
10 4wp4:A 43 40 0.1176 0.4651 0.5000 1.82e-04
11 6lnr:A 292 25 0.0882 0.0514 0.6000 1.1
12 6lnr:A 292 27 0.0882 0.0514 0.5556 4.0
13 6lnr:A 292 25 0.0824 0.0479 0.5600 8.2

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218