Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRCSTGDHHHHLVC
RACGKAVEVEGPAVEKWAEAIAAEHGYVNVAHTVEIFGTCADCAG

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vo0:G 131 125 1.0000 0.9542 1.0000 1.74e-88 3mwm:A, 3mwm:B, 7vo0:H, 7vo0:K, 7vo0:L, 7vo0:N, 7vo0:M, 7vo9:G, 7vo9:H, 7vo9:M, 7vo9:N, 7vpd:M, 7vpd:N, 7vpz:M, 7vpz:N, 7x74:G, 7x74:H, 7x74:M, 7x74:N, 7x75:G, 7x75:H, 7x75:K, 7x75:L, 7x75:M, 7x75:N, 7x76:G, 7x76:H, 7x76:M, 7x76:N
2 2o03:A 129 123 0.6080 0.5891 0.6179 2.19e-53
3 6d57:B 151 127 0.3120 0.2583 0.3071 2.35e-18 6d57:A, 4ets:A, 4ets:B
4 8j6w:A 145 126 0.3600 0.3103 0.3571 5.80e-18
5 2w57:A 131 121 0.3440 0.3282 0.3554 1.92e-17 2w57:B
6 5fd6:A 135 118 0.2960 0.2741 0.3136 2.02e-14 5fd6:B, 5fd6:C, 5fd6:D
7 5nhk:B 132 103 0.2320 0.2197 0.2816 2.78e-13 5nbc:A, 5nbc:B, 5nbc:C, 5nbc:D, 5nhk:A, 5nhk:C, 5nhk:D
8 2xig:C 150 123 0.2400 0.2000 0.2439 1.32e-12 2xig:A, 2xig:B, 2xig:D
9 2fe3:B 143 124 0.2640 0.2308 0.2661 4.28e-11 3f8n:A, 3f8n:B, 2fe3:A, 2rgv:A, 2rgv:B
10 4lmy:B 157 123 0.2800 0.2229 0.2846 2.04e-09 4i7h:A, 4i7h:B, 4lmy:A
11 4rb3:C 136 118 0.2240 0.2059 0.2373 4.93e-09 4raz:A, 4raz:B, 4rb1:A, 4rb1:B, 4rb2:C, 4rb2:D, 4rb3:D
12 7ne9:AAA 120 121 0.3040 0.3167 0.3140 9.77e-08 7ne9:BBB, 7ne9:CCC, 7ne9:DDD
13 6h1c:B 134 108 0.2640 0.2463 0.3056 1.51e-07 6h1c:A, 1mzb:A
14 7dh7:C 150 129 0.3360 0.2800 0.3256 1.18e-06 7dh7:A, 7dh7:B, 7dh7:D, 7dh8:A
15 4mtd:D 151 127 0.2960 0.2450 0.2913 4.14e-06 4mtd:A, 4mtd:B, 4mtd:C, 4mte:A, 4mte:B, 4mte:C, 4mte:D
16 6dk4:A 135 87 0.2160 0.2000 0.3103 1.19e-05 6dk4:B
17 3eyy:A 133 120 0.2560 0.2406 0.2667 6.66e-05 3eyy:B
18 5nl9:A 146 104 0.1760 0.1507 0.2115 0.081 5nl9:B
19 1k4m:A 213 34 0.0880 0.0516 0.3235 1.0 1k4m:B, 1k4m:C
20 1aq3:A 129 24 0.0800 0.0775 0.4167 1.5 1aq3:C, 1aq4:A, 1aq4:C, 2b2d:A, 2b2d:B, 2b2d:C, 2b2e:A, 2b2e:B, 2b2e:C, 2b2g:A, 2b2g:B, 2b2g:C, 2bny:A, 2bny:B, 2bny:C, 2bq5:A, 2bq5:B, 2bq5:C, 2bs0:A, 2bs0:B, 2bs0:C, 2bs1:A, 2bs1:B, 2bs1:C, 2bu1:A, 2bu1:B, 2bu1:C, 2c4q:A, 2c4q:B, 2c4q:C, 2c4y:A, 2c4y:B, 2c4y:C, 2c4z:A, 2c4z:B, 2c4z:C, 2c50:A, 2c50:B, 2c50:C, 2c51:A, 2c51:B, 2c51:C, 2iz8:A, 2iz8:B, 2iz8:C, 2iz9:A, 2iz9:C, 2izm:A, 2izm:B, 2izm:C, 2izn:A, 2izn:B, 2izn:C, 5msf:A, 5msf:C, 6msf:A, 6msf:C, 7msf:A, 7msf:C, 5tc1:D, 5tc1:E, 5tc1:G, 5tc1:H, 1u1y:A, 1u1y:C, 1zdh:A, 1zdh:C, 1zdi:A, 1zdi:C, 1zdj:A, 1zdj:C, 1zdk:A, 1zdk:C, 1zse:A, 1zse:B
21 6ze9:A 41 14 0.0640 0.1951 0.5714 1.9 6ze9:B, 6ze9:C
22 8dwe:A 355 28 0.1040 0.0366 0.4643 2.3 8dvp:A, 8dvy:A, 8dw0:A, 8dw4:A, 8dw7:A, 8dw7:D, 8dwd:A, 8dwe:D, 8dwf:A, 8dwf:D, 3g0q:A, 5kn8:A, 5kn9:A, 6q0c:A, 1rrq:A, 1rrs:A, 6u7t:A, 1vrl:A, 4yoq:A, 4yph:A, 4ypr:A, 4ypr:B
23 3g1p:B 250 34 0.0880 0.0440 0.3235 2.9 3g1p:A, 3p2u:A, 3p2u:B
24 1gka:B 174 71 0.1760 0.1264 0.3099 3.1
25 1soj:B 381 32 0.1040 0.0341 0.4062 3.8 1so2:A, 1so2:B, 1so2:C, 1so2:D, 1soj:A, 1soj:C, 1soj:D, 1soj:E, 1soj:F, 1soj:G, 1soj:H, 1soj:I, 1soj:J, 1soj:K, 1soj:L, 8syc:A, 8syc:D
26 7tuv:A 672 100 0.2320 0.0432 0.2900 4.2
27 7l28:C 375 39 0.1040 0.0347 0.3333 8.0 7eg0:A, 7eg0:C, 7eg1:A, 7eg1:C, 7eg4:C, 7eg4:A, 7kwe:A, 7kwe:D, 7kwe:C, 7kwe:B, 7l27:A, 7l27:B, 7l27:C, 7l27:D, 7l28:A, 7l28:B, 7l28:D, 7l29:A, 7l29:B, 7l29:C, 7l29:D, 7lrc:B, 7lrc:C, 7lrd:B, 7lrd:D
28 3vsz:C 482 35 0.0800 0.0207 0.2857 9.2 3vsz:A, 3vsz:B, 3vsz:E, 3vsz:F, 3vt0:A, 3vt0:B, 3vt0:C, 3vt0:E, 3vt0:F, 3vt1:B, 3vt1:C, 3vt1:E, 3vt1:F, 3vt1:A, 3vt2:A, 3vt2:B, 3vt2:C, 3vt2:D, 3vt2:E, 3vt2:F

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218