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BioLiP
>protein
RAQHPNAGTRFGRVYNRGFVRYGFGGFGMSVYSSKKDRTFKVMPVPPPPPATTAVEQRDDFADNRGLSATTRTLSPTFRM
FALEDGGVLVSHPSHAQIMRWNQRVHTEEGKAANSTVMDEYVNSRIQAIIADNTIENTSLSQWRKAHMWNVIKSHGKLQR
RWGTPDFVMGARSTLYNN

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aih:Aa 178 178 1.0000 1.0000 1.0000 1.82e-134 7am2:Aa, 7ane:Aa
2 6yxx:Af 139 144 0.4663 0.5971 0.5764 2.38e-57 7aoi:Af, 6hiv:Af, 6hix:Af, 6yxy:Af
3 7otj:A 438 36 0.0730 0.0297 0.3611 0.15 7otj:B
4 7b7h:A 370 54 0.0899 0.0432 0.2963 0.50 6szo:A
5 6syu:A 402 41 0.0730 0.0323 0.3171 0.84 6grw:A, 6gs0:A, 6syr:A, 6syv:A, 6sz0:A, 6sz4:A, 6t0e:A, 6t0e:B, 6t0i:A
6 3dbg:A 379 57 0.0955 0.0449 0.2982 3.0 3dbg:B
7 3el3:A 417 57 0.0955 0.0408 0.2982 3.1 3el3:B
8 2afh:B 522 25 0.0730 0.0249 0.5200 3.2 2afh:D, 2afi:B, 2afi:D, 2afi:J, 2afi:L, 6bbl:B, 6bbl:D, 8bts:B, 8bts:D, 8bts:I, 8bts:L, 5bvg:B, 5bvg:D, 5bvh:B, 5bvh:D, 6cdk:B, 6cdk:D, 8crs:D, 8crs:B, 5cx1:B, 5cx1:D, 5cx1:F, 5cx1:H, 5cx1:J, 5cx1:L, 5cx1:N, 5cx1:P, 8dbx:B, 8dbx:D, 8dby:B, 8dby:D, 8dfc:B, 8dfc:D, 8dfd:B, 8dfd:D, 8dpn:B, 8dpn:D, 8e3t:B, 8e3t:D, 8e3u:B, 8e3u:D, 8e3v:B, 8e3v:D, 8enl:B, 8enl:D, 8enm:B, 8enm:D, 8enn:B, 8enn:D, 8eno:B, 8eno:D, 1fp4:B, 1fp4:D, 1g20:B, 1g20:D, 1g21:B, 1g21:D, 7jrf:B, 7jrf:D, 3k1a:B, 3k1a:D, 1l5h:B, 1m1n:B, 1m1n:D, 1m1n:F, 1m1n:H, 1m1y:B, 1m1y:D, 1m1y:J, 1m1y:L, 1m34:B, 1m34:D, 1m34:J, 1m34:L, 7mci:B, 7mci:D, 2min:B, 2min:D, 3min:B, 3min:D, 1n2c:B, 1n2c:D, 4nd8:B, 4nd8:D, 6o7l:B, 6o7l:D, 6o7m:B, 6o7m:D, 6o7n:B, 6o7n:D, 6o7o:B, 6o7o:D, 6o7p:B, 6o7p:D, 6o7q:B, 6o7q:D, 6o7r:B, 6o7r:D, 6o7s:B, 6o7s:D, 6op1:B, 6op1:D, 6op2:B, 6op2:D, 6op3:B, 6op3:D, 6op4:B, 6op4:D, 8p8g:B, 8p8g:D, 4tku:B, 4tku:D, 4tkv:B, 4tkv:D, 3u7q:B, 3u7q:D, 6ug0:B, 6ug0:D, 7ut6:B, 7ut6:D, 7ut7:B, 7ut7:D, 7ut8:B, 7ut8:D, 7ut9:B, 7ut9:D, 7uta:B, 7uta:D, 5vq4:B, 5vq4:D, 6vxt:B, 6vxt:D, 4wna:B, 4wna:D, 4wza:B, 4wza:D, 4wzb:B, 4wzb:D, 4xpi:B, 4xpi:D
9 8xqw:A 988 36 0.0618 0.0111 0.3056 3.6
10 6wt7:A 331 100 0.1461 0.0785 0.2600 4.9
11 5vt6:A 245 62 0.1180 0.0857 0.3387 6.0 5vt6:B, 5vt6:C, 5vt6:D
12 6qva:A 310 52 0.0843 0.0484 0.2885 6.5
13 7c79:B 793 21 0.0506 0.0113 0.4286 7.5 6agb:B, 6ah3:B, 7c7a:B, 6w6v:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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