Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RALTSAGKVRKCTPKKEKKEKPRPPRGRAYKRLLYNKNFVDDTLIHNGRRLGPNNLLIRQKLGF

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bsj:Sj 67 63 0.9688 0.9254 0.9841 2.73e-40 8br8:Sj, 8brm:Sj, 8bsi:Sj, 8btd:Sj, 8btr:Sj, 8fvy:e, 8g4s:e
2 7pwf:e 37 57 0.5781 1.0000 0.6491 2.48e-14 7pwo:e1
3 5it7:e 55 49 0.4375 0.5091 0.5714 3.72e-14 5it9:e, 6uz7:e
4 8c3a:g 60 53 0.4375 0.4667 0.5283 9.84e-14 8c3a:DR, 8cq7:g, 8cq7:DR, 8cqw:g, 8cqw:DR, 8cre:g, 8cre:DR, 6fyx:e, 6fyy:e, 8oeq:g, 8oeq:DR, 7pzy:f, 7q08:f, 7q0f:f, 7q0p:f, 7q0r:f, 8q5i:f, 8rw1:e, 8s8d:e, 8s8e:e, 8s8f:e, 8s8g:e, 8s8h:e, 8s8i:e, 8s8j:e
5 4bts:AX 74 54 0.4531 0.3919 0.5370 4.17e-10 4bts:BX, 4bts:CX, 4bts:DX, 3j0l:X, 3j0o:X, 3j0p:X, 3j0q:X, 4v5o:AX, 4v5o:BX
6 4v6i:AZ 63 52 0.4688 0.4762 0.5769 5.04e-09 7a1g:g, 7b7d:g, 8bn3:E0, 8bqd:g, 8bqx:g, 8c01:g, 8c83:g, 8cah:g, 8cas:g, 8ccs:6, 8cdl:6, 8cdr:6, 8ceh:6, 8cf5:6, 8cg8:6, 8cgn:6, 8civ:6, 8cku:6, 8cmj:6, 5dat:E0, 5dat:e0, 5dc3:E0, 5dc3:e0, 5dge:E0, 5dge:e0, 5dgf:E0, 5dgf:e0, 5dgv:E0, 5dgv:e0, 6eml:g, 8eub:Be, 8evp:Be, 8evq:Be, 8evr:Be, 8evs:Be, 8evt:Be, 8ewb:Be, 8ewc:Be, 5fci:E0, 5fci:e0, 5fcj:E0, 5fcj:e0, 6gq1:AU, 6gqb:AU, 6gqv:AU, 6gsm:e, 6gsn:e, 6hhq:f, 6hhq:e0, 5i4l:E0, 5i4l:e0, 6i7o:g, 6i7o:gb, 8i7j:e, 3j16:E, 3j6x:30, 3j6y:30, 3j77:30, 3j78:30, 3j80:e, 3j81:e, 3jam:e, 3jap:e, 5juo:BC, 5jup:BC, 5jus:BC, 5jut:BC, 5juu:BC, 8k2d:Se, 8k82:Se, 5ll6:g, 5lyb:E0, 5lyb:e0, 5m1j:e2, 5mc6:g, 5mei:e0, 5mei:f, 7mpi:Be, 7mpj:Be, 7n8b:Be, 5ndg:E0, 5ndg:e0, 5ndv:E0, 5ndv:e0, 5ndw:E0, 5ndw:e0, 7nrc:Sg, 7nrd:Sg, 5obm:E0, 5obm:e0, 5on6:e0, 5on6:f, 7osa:eS30, 7osm:eS30, 6q8y:g, 6rbe:e, 7rr5:Se, 6s47:Bf, 6snt:e, 6sv4:g, 6sv4:gb, 6sv4:gc, 6t4q:Se, 6t7i:Se, 6t7t:Se, 6t83:eb, 6t83:5, 5tbw:f, 5tbw:e0, 6tb3:g, 5tga:E0, 5tga:e0, 5tgm:E0, 5tgm:e0, 6tnu:g, 4u3m:E0, 4u3m:e0, 4u3n:E0, 4u3n:e0, 4u3u:E0, 4u3u:e0, 4u4n:E0, 4u4n:e0, 4u4o:E0, 4u4o:e0, 4u4q:E0, 4u4q:e0, 4u4r:E0, 4u4r:e0, 4u4u:E0, 4u4u:e0, 4u4y:E0, 4u4y:e0, 4u4z:E0, 4u4z:e0, 4u50:E0, 4u50:e0, 4u51:E0, 4u51:e0, 4u52:E0, 4u52:e0, 4u53:E0, 4u53:e0, 4u55:E0, 4u55:e0, 4u56:E0, 4u56:e0, 4u6f:E0, 4u6f:e0, 4uer:X, 4v88:Ae, 4v88:Ce, 4v8y:A4, 4v8z:A4, 4v92:Be, 6woo:ee, 7wtn:Se, 7wto:Se, 7wtp:Se, 7wtq:Se, 5wyj:Sf, 5wyk:Sf, 6xiq:AU, 8y0u:Se, 6y7c:e, 6z6j:Se, 6z6k:Se, 6zce:f, 7zpq:Ae, 7zrs:Ae, 6zu9:g, 7zuw:Ae, 7zux:De, 6zvi:P, 7zw0:sg
7 8rxh:Se 61 43 0.3594 0.3770 0.5349 7.38e-09 6az1:e, 8ovj:Se, 8rxx:Se, 5t2a:AY
8 7r81:f2 43 40 0.3281 0.4884 0.5250 7.95e-09
9 8cbj:e 48 36 0.3125 0.4167 0.5556 1.21e-08 6fai:e, 6rbd:e, 6wdr:e, 7wtr:Se
10 8oo0:Se 44 39 0.3438 0.5000 0.5641 4.06e-08 7olc:Se, 7old:Se, 7z3n:Se, 7z3o:Se
11 4v8m:AY 65 43 0.3438 0.3385 0.5116 4.39e-08 7ase:c, 5opt:c, 8ova:AY, 8ove:AY
12 8a98:Se 52 45 0.3438 0.4231 0.4889 5.40e-08 8a3w:Se
13 4v3p:SZ 62 54 0.4062 0.4194 0.4815 9.74e-08 8auv:M, 8b2l:M1, 8ip8:ya, 8ip9:ya, 8ipa:ya, 8ipb:ya, 8jiw:Be, 4v7e:Be
14 6zj3:Se 64 53 0.4062 0.4062 0.4906 1.04e-07
15 6zu5:SEE 49 36 0.3125 0.4082 0.5556 5.91e-06
16 5xyi:e 42 38 0.3125 0.4762 0.5263 6.33e-06
17 7qix:W 48 39 0.3438 0.4583 0.5641 7.20e-06 7qiz:MA, 8r6f:e
18 8c00:g 30 34 0.2969 0.6333 0.5588 1.57e-04
19 3j7a:6 43 41 0.3125 0.4651 0.4878 1.95e-04 3jbn:6, 3jbo:6, 3jbp:6, 6okk:f, 8tpu:S6
20 4v6w:Ae 58 53 0.4062 0.4483 0.4906 8.69e-04 7a01:s3, 6xu6:Ae, 6xu7:Ae, 6xu8:Ae, 6zvh:e, 6zvk:s3
21 8g60:Se 51 40 0.3125 0.3922 0.5000 0.007 7a09:T, 9bkd:F, 7cpu:Se, 7cpv:Se, 8g5y:Se, 8glp:Se, 7k5i:e, 7oyc:e2, 8oz0:b, 7qp6:F, 7qp7:F, 7qvp:Re, 8scb:ee, 6xa1:Se, 6y57:Se, 6ybw:F, 6zmw:F, 6zon:T, 6zp4:T, 6zvj:T, 6zxd:e, 6zxe:e, 6zxf:e, 6zxg:e, 6zxh:e
22 7oya:e2 50 40 0.3125 0.4000 0.5000 0.010 7oyb:e2
23 8p5d:SEE 56 34 0.2656 0.3036 0.5000 0.018 8p60:SEE, 8p60:REE, 7qca:SEE
24 9bh5:Ae 45 36 0.2656 0.3778 0.4722 0.052 9cai:Ae
25 7tql:e 51 35 0.2812 0.3529 0.5143 0.22
26 6fec:V 59 53 0.3438 0.3729 0.4151 0.49 5a2q:e, 5aj0:Be, 9bdl:AS30, 9bdn:AS30, 9bdp:AS30, 8bhf:f3, 9bln:F, 8btk:AD, 4d5l:e, 4d61:e, 6d90:ff, 6d9j:ff, 9f1b:AD, 9f1c:AD, 9f1d:AD, 5flx:e, 6g18:e, 6g4s:e, 6g4w:e, 6g51:e, 6g53:e, 6g5h:e, 6g5i:e, 8g5z:Se, 8g61:Se, 8g6j:Se, 6gz3:Be, 6gz4:Be, 6gz5:Be, 6hcf:f1, 6hcj:f2, 6hcm:f1, 6hcq:f2, 8ifd:3Q, 8ife:3Q, 6ip5:3Q, 6ip6:3Q, 6ip8:3Q, 3j7p:Se, 3j7r:Se, 3jag:ee, 3jah:ee, 3jai:ee, 3jaj:Se, 3jan:Se, 8jdj:AQ, 8jdk:AQ, 8jdl:AQ, 8jdm:AQ, 7jqb:f, 7jqc:f, 5k0y:V, 8k2c:Se, 4kzx:e, 4kzy:e, 4kzz:e, 5lks:Se, 7ls1:T3, 7ls2:T3, 5lzs:ee, 5lzt:ee, 5lzu:ee, 5lzv:ee, 5lzw:ee, 5lzx:ee, 5lzy:ee, 5lzz:ee, 7mdz:ee, 6mtb:ee, 6mtc:ee, 6mtd:ee, 6mte:ee, 7nwg:f2, 7nwh:ee, 7nwi:ee, 7o7y:AD, 7o7z:AD, 7o80:AD, 7o81:AD, 5oa3:e, 6ole:Se, 6olf:Se, 6olg:Be, 6oli:Se, 6olz:Be, 6om0:Se, 6om7:Se, 7oyd:Ee, 8p03:i, 8p09:i, 8p2k:AD, 6p4g:f, 6p4h:f, 6p5i:f, 6p5j:f, 6p5k:f, 6p5n:f, 8pj1:F, 8pj2:F, 8pj3:F, 8pj4:F, 8pj5:F, 8pj6:F, 8ppk:e, 8ppl:Ae, 8q7z:AD, 8q87:AD, 7qgg:Se, 8qoi:Se, 7qvp:Se, 6qzp:Se, 7r4x:e, 6r5q:AA, 6r6g:AA, 6r6p:AA, 6r7q:AA, 6sgc:f1, 7syg:f, 7syh:f, 7syi:f, 7syj:f, 7syk:f, 7syl:f, 7sym:f, 7syn:f, 7syo:f, 7syp:f, 7syq:f, 7syr:f, 7sys:f, 7syt:f, 7syu:f, 7syv:f, 7syw:f, 7syx:f, 5t2c:AT, 8t4s:e, 7toq:AS30, 7tor:AS30, 7ucj:Ee, 7uck:Ee, 4ug0:Se, 4ujc:Ce, 4ujd:Ce, 4uje:Be, 4v6x:Ae, 5vyc:e1, 5vyc:e2, 5vyc:e3, 5vyc:e4, 5vyc:e5, 5vyc:e6, 6w2s:f, 6w2t:f, 7wtx:e, 7wtz:e, 7wu0:e, 7xnx:Se, 7xny:Se, 8xsx:Se, 8xsy:Se, 8xsz:Se, 8xxl:Se, 8xxm:Se, 8xxn:Se, 6y0g:Se, 8y0w:Se, 8y0x:Se, 6y2l:Se, 6yal:i, 6yam:i, 6yan:i, 8yoo:Se, 8yop:Se, 6z6l:Se, 6z6m:Se, 6z6n:Se, 7zjw:SE, 7zjx:SE, 6zlw:e, 6zm7:Se, 6zme:Se, 6zmi:Se, 6zmo:Se, 6zmt:e, 6zn5:e, 6zoj:e, 6zok:e, 6zuo:e, 6zv6:e
27 6rm3:SEE 56 33 0.2344 0.2679 0.4545 0.51
28 1mqt:A 271 36 0.2500 0.0590 0.4444 5.6
29 8g4x:C 343 30 0.1719 0.0321 0.3667 6.8 8g5f:A, 8g5g:C, 8g5h:A
30 9eqg:D 353 30 0.1562 0.0283 0.3333 7.0 6d6t:B, 6d6t:D, 6d6u:B, 6d6u:D, 8dd2:D, 8dd2:B, 8dd3:D, 8dd3:B, 6dw0:A, 6dw0:C, 6dw1:C, 6dw1:A, 9eqg:A, 8foi:A, 8foi:C, 8g4n:A, 8g4n:C, 8g4o:C, 8g4x:A, 8g5f:C, 8g5g:A, 8g5h:C, 6hug:A, 6hug:D, 6huj:A, 6huj:D, 6huk:A, 6huk:D, 6huo:A, 6huo:D, 6hup:A, 6hup:D, 6i53:A, 6i53:D, 7pbd:A, 7qne:A, 7qne:D, 8sgo:B, 8sgo:D, 8si9:B, 8si9:D, 8sid:B, 8sid:D, 7t0w:D, 7t0z:D, 7t0z:B, 8vqy:B, 8vqy:D, 8vrn:D, 8vrn:B, 6x3s:D, 6x3s:B, 6x3t:D, 6x3t:B, 6x3u:D, 6x3v:D, 6x3w:D, 6x3w:B, 6x3x:D, 6x3x:B, 6x3z:D, 6x3z:B, 6x40:D, 6x40:B
31 7bss:A 816 40 0.2031 0.0159 0.3250 7.2 7bsu:A, 7bsv:A, 7bsw:A, 7vsg:A
32 7bsp:A 1028 40 0.2031 0.0126 0.3250 7.3 7bsq:A, 7vsh:A
33 6lkn:A 1064 40 0.2031 0.0122 0.3250 7.3 6lkn:E, 6lkn:I, 6lkn:M
34 6zck:A 271 26 0.2031 0.0480 0.5000 8.5
35 3iox:A 489 19 0.1562 0.0204 0.5263 8.9 3ipk:A, 3ipk:B, 6ubv:A, 6ubv:B, 6ubv:C, 6ubv:D
36 7ozk:A 297 41 0.2188 0.0471 0.3415 9.8 7ozl:A
37 6mn5:D 260 34 0.1875 0.0462 0.3529 10.0 6mn3:A, 6mn3:B, 6mn4:A, 6mn4:B, 6mn4:C, 6mn4:D, 6mn4:E, 6mn4:F, 6mn5:A, 6mn5:B, 6mn5:C, 6mn5:E, 6mn5:F

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218