Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG
C

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5eyo:C 88 78 0.9630 0.8864 1.0000 1.65e-52 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
2 1hlo:A 80 68 0.8395 0.8500 1.0000 2.44e-45
3 5i50:B 96 83 0.4198 0.3542 0.4096 2.41e-13 5i50:A, 1nkp:A, 1nkp:D
4 8ia3:E 111 85 0.3704 0.2703 0.3529 6.34e-09 8ia3:A, 8ia3:B, 8ia3:F
5 1an4:A 65 59 0.3086 0.3846 0.4237 2.71e-08 1an4:B
6 8osb:B 66 50 0.2099 0.2576 0.3400 1.44e-05
7 8ow1:B 116 78 0.3086 0.2155 0.3205 7.33e-05 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
8 1am9:C 82 60 0.2346 0.2317 0.3167 8.13e-05 1am9:D, 1am9:A, 1am9:B
9 8hov:A 87 74 0.2716 0.2529 0.2973 2.80e-04 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
10 7f2f:B 94 79 0.2469 0.2128 0.2532 7.53e-04 7f2f:A
11 5gnj:B 77 51 0.2099 0.2208 0.3333 0.005 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
12 1nlw:A 79 78 0.2963 0.3038 0.3077 0.014 1nlw:D
13 7xi3:A 287 55 0.2222 0.0627 0.3273 0.036
14 4a15:A 596 57 0.1605 0.0218 0.2281 0.054 5h8w:A, 2vsf:A
15 7xq5:A 75 62 0.2222 0.2400 0.2903 0.21
16 4zpr:A 235 48 0.1728 0.0596 0.2917 0.22
17 1mdy:A 68 41 0.1481 0.1765 0.2927 0.23 1mdy:B, 1mdy:C, 1mdy:D
18 7xi4:A 283 53 0.1975 0.0565 0.3019 0.33 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
19 7d8t:A 199 52 0.1852 0.0754 0.2885 0.38 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
20 5nj8:D 134 53 0.1852 0.1119 0.2830 1.3
21 7aor:al 292 23 0.1358 0.0377 0.4783 1.4 6hiv:DL, 6hiw:DL
22 8i0p:K 312 92 0.3086 0.0801 0.2717 3.2
23 7z5i:A 56 43 0.1235 0.1786 0.2326 3.7 7z5i:B, 7z5k:A, 7z5k:B
24 6z1p:Br 523 78 0.2346 0.0363 0.2436 4.0
25 3afv:A 439 37 0.1358 0.0251 0.2973 4.7 2d3q:A, 2d3q:B, 3mm1:A, 3mm2:A, 3mm3:A, 3vxi:A, 3vxj:A
26 5x7g:A 700 33 0.1235 0.0143 0.3030 5.6 5x7h:A
27 1a0a:A 63 61 0.1728 0.2222 0.2295 8.6 1a0a:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218