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BioLiP
>protein
RAELTVPEMRQWLRNWVGKAVGKAPDSIDESVPMVELGLSSRDAVAMAADIEDLTGVTLSVAVAFAHPTIESLATRIIE

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6d8i:A 79 79 1.0000 1.0000 1.0000 1.99e-52
2 8cuy:A 1016 76 0.7468 0.0581 0.7763 5.46e-34
3 8qzi:E 86 61 0.3038 0.2791 0.3934 1.01e-06 7bdw:B, 6rcx:B
4 5u89:A 1039 43 0.2025 0.0154 0.3721 0.056
5 5hv8:A 95 61 0.2152 0.1789 0.2787 0.11
6 2liw:A 99 75 0.2278 0.1818 0.2400 0.13
7 8ahq:C 78 65 0.1899 0.1923 0.2308 0.19 8ahq:D
8 4egs:A 147 60 0.2532 0.1361 0.3333 0.45 4egs:B
9 2qqd:C 159 50 0.2152 0.1069 0.3400 0.72 1mt1:A, 1mt1:F, 1mt1:B, 1mt1:C, 1mt1:G, 1mt1:J, 1mt1:H, 1mt1:K, 1n13:B, 1n13:C, 1n13:D, 1n13:A, 1n13:F, 1n13:H, 1n13:K, 1n13:G, 1n13:J, 1n13:I, 1n13:L, 2qqc:B, 2qqc:C, 2qqc:A, 2qqc:F, 2qqc:D, 2qqc:G, 2qqc:J, 2qqc:I, 2qqc:L, 2qqc:H, 2qqc:K, 2qqd:A, 2qqd:E, 2qqd:B
10 6p5r:A 308 21 0.1013 0.0260 0.3810 3.6 6u9x:D, 6u9x:A
11 3vbe:C 329 31 0.1899 0.0456 0.4839 3.9 3vbe:A, 3vbe:B, 3vbe:D, 3vc3:A, 3vc3:B, 3vc3:C, 3vc3:D, 3vc3:E, 3vc3:F
12 4r0m:A 637 39 0.1772 0.0220 0.3590 4.1 4r0m:B
13 6gua:A 821 46 0.2152 0.0207 0.3696 5.6 6gua:B, 6gua:C, 6gua:D, 6gua:E, 6gua:F, 6gua:G, 6gua:H
14 4han:A 293 62 0.2152 0.0580 0.2742 5.9 7aen:A, 7aen:B, 7als:A, 7als:B, 3ap4:A, 3ap4:B, 3ap4:C, 3ap4:D, 3ap6:A, 3ap6:B, 3ap6:C, 3ap6:D, 3ap7:A, 3ap9:A, 4bmb:A, 4bme:A, 4bme:B, 8cm8:A, 8cm8:B, 4fqz:A, 4gxl:A, 5gzc:A, 5gzd:A, 5gze:A, 5gzf:A, 5gzg:A, 4han:B, 7p11:A, 7p11:B, 7p1m:A, 7p1m:B, 5t7i:A, 5t7s:A, 5t7t:A, 5t7u:A, 3vkl:A, 3vkl:B, 3vkm:A, 3vkm:B, 3vko:A, 3vko:B, 5vwg:A, 6w4z:A, 6w4z:B, 2yxs:A, 6z6y:A
15 8w2d:A 322 44 0.2025 0.0497 0.3636 6.0 8w2d:B
16 6tj7:A 134 18 0.0886 0.0522 0.3889 6.8
17 4ai6:A 2650 34 0.1139 0.0034 0.2647 9.0 4ai6:B, 4akg:A, 4akg:B, 4akh:A, 4akh:B, 4aki:A, 4aki:B, 3crt:A, 3cru:A, 3d0z:A, 1dug:A, 1dug:B, 1gne:A, 1gtb:A, 8gyd:A, 8gyd:B, 5gzz:B, 5gzz:C, 5gzz:D, 5gzz:E, 5gzz:F, 5gzz:G, 6ji6:A, 1m99:A, 1m9a:A, 1m9b:A, 7mi3:A, 7mi6:A, 6rwd:A, 6rwd:B, 1u87:A, 1u88:A, 1ua5:A, 4wr4:A, 4wr5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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