Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RADGFIGSTTNLIMVASTAAFLAAGKFGLAPTVKRGTDAACKLVDRPNAAGLISNDPSGFTAVDTLAFGALGHIAGVGIV
LGLRATGNL

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8cmo:K 89 89 1.0000 1.0000 1.0000 1.06e-57
2 7dz7:K 86 86 0.6854 0.7093 0.7093 5.15e-30 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
3 7a4p:K 86 86 0.6067 0.6279 0.6279 1.41e-29 6zzx:K, 6zzy:K
4 8htu:K 81 82 0.6067 0.6667 0.6585 1.78e-29 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
5 6igz:K 80 82 0.5843 0.6500 0.6341 4.95e-28
6 8bcv:K 88 85 0.5393 0.5455 0.5647 1.81e-24 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
7 8j6z:K 84 83 0.5281 0.5595 0.5663 2.76e-23 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
8 8wgh:K 83 81 0.5281 0.5663 0.5802 7.05e-23
9 7wfd:AK 65 83 0.4831 0.6615 0.5181 1.83e-18 7wfe:BK, 7wg5:AK, 7wg5:BK
10 7yca:K 87 79 0.4157 0.4253 0.4684 3.52e-15
11 4y28:K 57 80 0.4270 0.6667 0.4750 3.69e-14
12 8j7a:K 56 80 0.4157 0.6607 0.4625 8.73e-14
13 6sl5:K 84 83 0.4157 0.4405 0.4458 1.44e-10
14 4xk8:k 46 79 0.3596 0.6957 0.4051 4.03e-07 4xk8:K
15 7zqc:G 80 70 0.2584 0.2875 0.3286 5.72e-07 7bgi:G, 7blx:G, 6jo5:G, 6jo6:G
16 8cmo:G 93 82 0.3146 0.3011 0.3415 7.23e-07
17 7zq9:G 95 81 0.3034 0.2842 0.3333 2.96e-06 7d0j:G, 7dz7:G, 7dz8:G, 8h2u:G, 7zqd:G, 7zqd:G2
18 6ijo:G 70 70 0.2697 0.3429 0.3429 3.13e-06 7r3k:G
19 5zji:G 97 32 0.2135 0.1959 0.5938 2.63e-05
20 6l35:G 98 29 0.2022 0.1837 0.6207 3.34e-05 8htu:G, 7ksq:G, 7kux:G, 7xqp:G
21 7a4p:G 99 29 0.1910 0.1717 0.5862 4.93e-05 6zzx:G, 6zzy:G
22 8wgh:G 98 29 0.1798 0.1633 0.5517 1.99e-04
23 8bcv:G 94 29 0.1798 0.1702 0.5517 2.16e-04
24 7wg5:AG 99 29 0.1798 0.1616 0.5517 2.93e-04 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G
25 3lw5:G 95 29 0.1685 0.1579 0.5172 2.99e-04 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
26 7yca:G 95 79 0.2697 0.2526 0.3038 5.64e-04
27 6jo5:K 45 22 0.1798 0.3556 0.7273 0.027 8h2u:K, 6jo6:K
28 6kif:K 78 31 0.1685 0.1923 0.4839 0.048 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
29 6k61:k 78 31 0.1910 0.2179 0.5484 0.075 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
30 7dr2:aK 69 24 0.1461 0.1884 0.5417 0.15 7dr0:K, 7dr2:cK
31 7qco:K 65 35 0.1798 0.2462 0.4571 0.20 7qco:R, 7qco:r, 7qco:k
32 6dzi:R 124 36 0.1910 0.1371 0.4722 0.54 6dzp:R, 7f0d:Q, 8fr8:W, 8kab:R, 7kgb:Q, 7msc:Q, 7msh:Q, 7msm:Q, 7msz:Q, 7mt2:Q, 7mt3:Q, 7mt7:Q, 5o60:R, 5o61:R, 7s0s:S, 7sfr:Q, 5v7q:Q, 5v93:Q, 8v9j:S, 8v9k:S, 8v9l:S, 8whx:T, 8why:T, 8wi7:T, 8wi8:T, 8wib:T, 8wic:T, 7xam:R, 5xym:Q, 8xz3:R, 7y41:R, 5zeb:R, 5zep:R, 5zet:R
33 6sl5:G 101 77 0.2697 0.2376 0.3117 0.72
34 7fi3:A 724 28 0.1461 0.0180 0.4643 0.74 7fi3:B, 7fi3:C, 7fi3:D
35 3uxf:A 449 47 0.2247 0.0445 0.4255 0.85
36 6tcl:K 60 19 0.1461 0.2167 0.6842 0.92 6tcl:KK
37 8wm6:K 69 36 0.1798 0.2319 0.4444 0.96 8wmj:K, 8wmv:K, 8wmw:K
38 7y5e:KN 70 32 0.1461 0.1857 0.4062 1.3 7y5e:K2, 7y7a:K7, 7y7a:Ko
39 3wl4:A 267 66 0.1573 0.0524 0.2121 1.5 3wl4:B, 4xm0:A, 4xm0:B, 4xm0:C, 4xm0:D, 4xm0:E, 4xm0:F, 4xm1:A, 4xm1:B, 4xm1:C, 4xm1:D, 4xm1:E, 4xm1:F, 4xm2:A, 4xm2:B, 4xm2:C, 4xm2:D, 4xm2:E, 4xm2:F
40 8dmf:A 718 28 0.1236 0.0153 0.3929 1.6 7uvp:A
41 7y7b:K 78 32 0.1685 0.1923 0.4688 2.0 7y8a:K
42 4l6v:K 80 24 0.1348 0.1500 0.5000 3.2 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
43 5zgb:K 59 18 0.1348 0.2034 0.6667 3.4 7blz:K, 6fos:K, 5zgh:K
44 4kt0:K 53 24 0.1348 0.2264 0.5000 4.3
45 4mrn:A 600 35 0.1461 0.0217 0.3714 4.5 4mrn:B, 4mrp:A, 4mrp:B, 4mrr:A, 4mrr:B, 4mrs:A, 4mrs:B, 4mrv:A, 4mrv:B, 6pam:A, 6pam:B, 6pam:C, 6pam:D, 6pam:E, 6pam:F, 6pam:G, 6pam:H, 6pan:A, 6pan:B, 6pao:A, 6pao:B, 6paq:A, 6paq:B, 6par:A, 6par:B, 6par:C, 6par:D, 6par:E, 6par:F, 6vqt:A, 6vqt:B
46 6kmx:aK 46 20 0.1236 0.2391 0.5500 5.1 6kmx:bK, 6kmx:cK
47 3men:B 342 22 0.1236 0.0322 0.5000 5.7 3men:A, 3men:C, 3men:D

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218