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BioLiP
>protein
RAAMDAVCAKVDAANRLGDPLEAFPVFKKYDRNGLNVSIECKRVSGLEPATVDWAFDLTKTNMQTMYEQSEWGWKDREKR
EEMTDDRAWYLIAWENSSVPVAFSHFRFDVECGDEVLYCYEVQLESKVRRKGLGKFLIQILQLMANSTQMKKVMLTVFKH
NHGAYQFFREALQFEIDDSSPSDCSYEILSRRTKF

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7kd7:A 204 202 1.0000 0.9559 0.9653 7.57e-146 7kd7:D, 7kpu:D, 7kpu:A, 4u9v:B, 4u9w:B, 4u9w:A, 4u9w:C, 4u9w:D
2 4ua3:B 193 149 0.2564 0.2591 0.3356 1.12e-21 4ua3:A
3 3ld2:B 162 61 0.0923 0.1111 0.2951 0.23 3ld2:A, 3ld2:C, 3ld2:D
4 6azq:G 226 58 0.0718 0.0619 0.2414 2.2 6azq:H, 6azq:A, 6azq:B, 6azq:C, 6azq:D, 6azq:E, 6azs:B, 6azs:D
5 6ogz:A 1082 75 0.0872 0.0157 0.2267 2.2 6ogy:A, 6oj6:P, 2r7r:A, 2r7s:A, 2r7t:A, 2r7u:A, 2r7v:A, 2r7w:A, 2r7x:A, 2r7x:B
6 2z86:C 603 76 0.0974 0.0315 0.2500 2.3 2z86:A, 2z86:B, 2z86:D, 2z87:A, 2z87:B
7 7m7f:A 1390 32 0.0769 0.0108 0.4688 2.6 2fr0:A, 2fr1:A, 7m7i:A
8 6bvc:A 154 72 0.0821 0.1039 0.2222 4.1 1bo4:A, 1bo4:B
9 6z00:A 156 82 0.1077 0.1346 0.2561 5.0 6yzz:A, 6z00:B
10 7cgv:A 310 18 0.0513 0.0323 0.5556 6.3 7cgv:B, 7cgv:C, 7cgv:D
11 1tiq:A 173 59 0.0821 0.0925 0.2712 7.0 1tiq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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