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BioLiP
>protein
RAACQAKRGDQRCDRECNSPGCGWDGGDCSLSVGDPWRQCEALQCWRLFNNSRCDPACSSPACLYDNFDCHAERTCNPVY
EKYCADHFADGRCDQGCNTEECGWDGLDCASVPALLARGVLVLTVLLPPEELLRSSADFLQRLSAILRTSLRFRLDAHGQ
AMVFPYHRPEVGSVVMLEIDNRLCLHCFPDAQSAADYLGALSAVERLDFPYPLRDVRGEP

The query sequence (length=220) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zlp:A 241 233 0.9909 0.9046 0.9356 2.35e-152 5czv:A, 5czx:A, 5czx:B, 6xsw:C, 6xsw:F, 6xsw:J, 6xsw:X, 4zlp:B
2 7abv:A 232 224 0.5273 0.5000 0.5179 3.57e-82 3eto:A, 3eto:B, 3i08:A, 3i08:C, 3l95:X, 3l95:Y
3 2oo4:A 226 223 0.4955 0.4823 0.4888 1.22e-64 2oo4:B
4 2oo4:A 226 29 0.0727 0.0708 0.5517 6.87e-04 2oo4:B
5 1pb5:A 35 27 0.0682 0.4286 0.5556 6.02e-04
6 1pb5:A 35 27 0.0500 0.3143 0.4074 4.5
7 8hgg:C 1484 24 0.0636 0.0094 0.5833 0.21 8hgg:D, 8hgh:A, 8hgh:B
8 8hgg:C 1484 61 0.0909 0.0135 0.3279 1.4 8hgg:D, 8hgh:A, 8hgh:B
9 8hgg:C 1484 31 0.0591 0.0088 0.4194 5.3 8hgg:D, 8hgh:A, 8hgh:B
10 8a7e:C 1524 24 0.0636 0.0092 0.5833 0.23 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
11 8a7e:C 1524 61 0.0909 0.0131 0.3279 1.6 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
12 8a7e:C 1524 31 0.0591 0.0085 0.4194 5.8 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
13 4lfl:B 172 30 0.0636 0.0814 0.4667 0.77 4lfl:D, 4lfm:B, 4lfm:D, 4lfn:B, 4lfn:D
14 8oxm:A 2748 19 0.0409 0.0033 0.4737 2.8 8oxm:B
15 7ni5:A 2791 19 0.0409 0.0032 0.4737 2.8 7ni4:A, 7ni4:B, 7ni5:B, 7ni6:A, 7ni6:B, 8oxq:A, 8oxq:B
16 7sic:A 2773 19 0.0409 0.0032 0.4737 2.9 8oxo:A, 8oxo:B, 8oxp:A, 8oxp:B, 7sic:B, 7sid:A, 7sid:C
17 6f59:B 185 61 0.0682 0.0811 0.2459 7.7 8a7n:A, 8cdn:A, 6f58:A, 6f58:B, 6f59:A, 8fmu:A, 8fmu:B, 5qrf:A, 5qrg:A, 5qrh:A, 5qri:A, 5qrj:A, 5qrk:A, 5qrl:A, 5qrm:A, 5qrn:A, 5qro:A, 5qrq:A, 5qrr:A, 5qrs:A, 5qrt:A, 5qru:A, 5qrv:A, 5qrw:A, 5qrx:A, 5qry:A, 5qrz:A, 5qs0:A, 5qs1:A, 5qs3:A, 5qs4:A, 5qs5:A, 5qs6:A, 5qs7:A, 5qs9:A, 5qsa:A, 5qsb:A, 5qsc:A, 5qsd:A, 5qse:A, 5qsf:A, 5qsg:A, 5qsh:A, 5qsj:A, 5qsk:A, 5qsl:A, 5qt0:A, 1xbr:A, 1xbr:B, 7zk2:A, 6zu8:A
18 8a7d:Q 273 31 0.0591 0.0476 0.4194 8.3
19 6jk8:B 801 100 0.1091 0.0300 0.2400 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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