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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QYTTQELNAMSNEDLARLGTELDDVTIAYRKERFPIANDPAEKRAARAVTFWLVLGIIGGLGFLATYIFWPWEYKAHGDE
GLLAYTLYTPMLGITSGLCILSLGFAVVLYVKKFIPEEIAVQRRHDGPSEEVDRRTIVALLNDSWQTSTLGRRKLIMGLA
GGGAVLAGLTIIAPMGGMIKNPWNPKEGPMDVQGDGTLWTSGWTLVENDVKVYLGRDTAAIAESHTDATGEHWSTTGVSR
LVRMRPEDLAAASMETVFPLPAEMVNDGAEYDPAKDVYEHQMHSVHGPRNAVMLIRLRTADAEKVIEREGQESFHYGDYY
AYSKICTHIGCPTSLYEAQTNRILCPCHQSQFDALHYGKPVFGPAARALPQLPITVDEEGYLIAAGNFIEPLGPAFWERK
S

The query sequence (length=401) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7qhm:A 402 401 1.0000 0.9975 1.0000 0.0 7q21:A, 7q21:a, 7qhm:N, 7qho:A, 7qho:N
2 7e1v:A 378 394 0.4963 0.5265 0.5051 9.01e-136 7e1v:M, 7e1w:M, 7e1w:A, 7e1x:M, 7e1x:A, 8hcr:A, 8hcr:M
3 6adq:A 382 404 0.5212 0.5471 0.5173 4.26e-132 6adq:M, 6hwh:A, 6hwh:B, 8ovc:M, 8ovc:G, 8ovd:M, 8ovd:G, 7rh5:M, 7rh5:Y, 7rh6:M, 7rh6:Y, 7rh7:Y, 7rh7:M
4 8cff:B 134 61 0.0673 0.2015 0.4426 1.69e-10 8cff:D, 8cff:F, 8cff:H, 8cgs:B, 8cgs:D, 8cgs:F, 8cgs:H, 8ch9:B, 8ch9:D, 8ch9:F, 8ch9:H, 1g8k:B, 1g8k:D, 1g8k:F, 1g8k:H
5 1g8j:D 129 60 0.0648 0.2016 0.4333 1.91e-10 1g8j:B
6 3fou:A 156 105 0.0973 0.2500 0.3714 1.50e-09 3fou:B, 1nyk:A, 1nyk:B
7 3azc:A 133 107 0.0873 0.2632 0.3271 2.30e-08
8 4aay:B 132 70 0.0698 0.2121 0.4000 2.49e-07 4aay:D, 4aay:F, 4aay:H, 8ccq:B, 8ccq:D, 8ccq:F, 8ccq:H, 8ed4:B, 8ed4:D, 8ed4:F, 8ed4:H, 5nqd:B, 5nqd:D, 5nqd:F, 5nqd:H
9 4h44:D 166 50 0.0574 0.1386 0.4600 4.43e-07 4ogq:D, 2zt9:D
10 7r0w:D 169 50 0.0549 0.1302 0.4400 1.91e-06 7r0w:L, 7zxy:D, 7zxy:L
11 2d2c:D 168 64 0.0549 0.1310 0.3438 5.14e-06 2d2c:Q, 2e74:D, 2e75:D, 2e76:D, 4h0l:D, 4h13:D, 4i7z:D, 4pv1:D, 1vf5:D, 1vf5:Q
12 5cxm:A 99 69 0.0599 0.2424 0.3478 5.71e-06 5cxm:B, 5cxm:C, 5cxm:D
13 8hn2:A 110 71 0.0623 0.2273 0.3521 7.39e-06 8hn2:B
14 6rqf:L 179 104 0.0698 0.1564 0.2692 8.32e-06 7qrm:D, 7qrm:L, 1rfs:A, 6rqf:D, 7zyv:D, 7zyv:L
15 1q90:C 126 52 0.0549 0.1746 0.4231 1.23e-05
16 8iuf:QE 231 73 0.0549 0.0952 0.3014 3.22e-05 8iuf:Qe, 8iuj:QE, 8iuj:Qe
17 8b6j:E 245 77 0.0599 0.0980 0.3117 1.25e-04 8b6j:e, 8bqs:E, 8bqs:e, 8gym:qE, 8gym:qe, 8gym:QE, 8gym:Qe, 8gzu:qE, 8gzu:qe, 8gzu:QE, 8gzu:Qe, 7tgh:3E
18 2qpz:A 103 72 0.0549 0.2136 0.3056 0.001
19 1zrt:E 183 67 0.0574 0.1257 0.3433 0.003 6xi0:E, 6xi0:R, 6xkt:E, 6xkt:R, 6xku:E, 6xku:R, 6xkv:E, 6xkv:R, 6xkw:E, 6xkw:R, 6xkx:E, 6xkx:R, 6xkz:E, 6xkz:R, 1zrt:R
20 8asi:E 181 83 0.0599 0.1326 0.2892 0.004 8asi:A, 8asj:A, 8asj:E, 2fyn:C, 2fyn:F, 2fyn:I, 2fyn:L, 2fyn:O, 2fyn:R, 5kkz:G, 5kkz:C, 5kkz:Q, 5kkz:M, 5kli:C, 5kli:G, 5kli:M, 5kli:Q, 6nhh:C, 6nhh:G, 6nin:C, 6nin:G, 6nin:M, 6nin:Q, 6nin:U, 6nin:Y, 2nuk:A, 2num:A, 2nve:A, 2nvf:A, 2nvg:A, 2nwf:A, 2qjk:C, 2qjk:F, 2qjk:I, 2qjk:L, 2qjk:O, 2qjk:R, 2qjp:F, 2qjp:C, 2qjp:L, 2qjp:I, 2qjy:F, 2qjy:C, 2qjy:L, 2qjy:I, 2qjy:R, 2qjy:O, 7tce:C, 7tce:G, 7tce:M, 7tce:Q, 7tlj:G, 7tlj:C
21 1jm1:A 202 75 0.0599 0.1188 0.3200 0.028
22 5bok:A 102 61 0.0449 0.1765 0.2951 0.029
23 2yiu:F 174 92 0.0623 0.1437 0.2717 0.044 2yiu:C
24 2a06:E 196 56 0.0499 0.1020 0.3571 0.087 2a06:R, 1bcc:E, 2bcc:E, 3bcc:E, 1be3:E, 1bgy:Q, 4d6t:R, 4d6u:R, 7dkf:Q1, 2fyu:E, 5gpn:E, 5gpn:Q, 5gup:2, 5gup:4, 6haw:E, 8iog:C, 8iog:c, 5j4z:AE, 5j4z:AP, 5j7y:AE, 5j7y:AP, 5j8k:AE, 5j8k:AP, 5klv:E, 1l0l:E, 1l0n:E, 5luf:q, 6nhg:E, 5nmi:E, 1ntk:E, 1ntm:E, 1ntz:E, 1nu1:E, 7o37:E, 7o37:P, 7o3c:E, 7o3c:P, 7o3h:E, 7o3h:P, 5okd:E, 8p65:E, 8p65:R, 1pp9:R, 1pp9:E, 1ppj:R, 1ppj:E, 8pw5:E, 8pw5:P, 8pw6:E, 8pw6:P, 8pw7:E, 8pw7:P, 6q9e:f1, 6q9e:f2, 6qbx:f1, 6qbx:f2, 6qc2:f1, 6qc2:f2, 6qc3:f1, 6qc3:f2, 6qc4:f1, 6qc4:f2, 7r3v:E, 1rie:A, 1sqb:E, 1sqp:E, 1sqq:E, 1sqv:E, 1sqx:E, 7tay:E, 7tz6:E, 7tz6:R, 8ugd:3E, 8ugd:3R, 8uge:3E, 8uge:3R, 8ugf:3E, 8ugf:3R, 8ugg:3E, 8ugg:3R, 8ugh:3E, 8ugh:3R, 8ugi:3E, 8ugi:3R, 8ugj:3E, 8ugj:3R, 8ugk:3E, 8ugk:3R, 8ugn:3E, 8ugn:3R, 8ugr:3E, 8ugr:3R, 8ugr:6E, 8ugr:6R, 5xte:C, 5xte:P, 5xth:AC, 5xth:AP, 5xti:AC, 5xti:AP, 6xvf:E, 2ybb:e, 2ybb:E, 6zfs:E, 6zft:E, 6zfu:E
25 8ibd:AE 109 44 0.0399 0.1468 0.3636 0.090 8ibg:AE
26 7rja:C 181 56 0.0524 0.1160 0.3750 0.097 7rja:M, 7rjb:E, 7rjc:E, 7rjd:E, 7rje:C, 7rje:M
27 3cwb:E 196 41 0.0399 0.0816 0.3902 0.14 3cwb:R, 3h1h:E, 3h1h:R, 3h1i:R, 3h1i:E, 3h1j:R, 3h1j:E, 3h1k:E, 3h1k:R, 3h1l:E, 3h1l:R, 3l70:E, 3l70:R, 3l71:E, 3l71:R, 3l72:E, 3l72:R, 3l73:E, 3l73:R, 3l74:E, 3l74:R, 3l75:E, 3l75:R, 3tgu:E, 3tgu:R, 4u3f:E, 4u3f:R
28 8bpx:AD 196 105 0.0723 0.1480 0.2762 0.22 8bel:D, 8bel:N, 8bpx:BD, 8bq5:AD, 8bq5:BD, 8bq6:AD, 8bq6:BD
29 8smr:Z 194 67 0.0549 0.1134 0.3284 0.23 8smr:C, 8snh:C, 8snh:Z
30 7yr9:A 146 63 0.0524 0.1438 0.3333 0.26 7yr9:B, 7yra:A, 7yra:B
31 3cx5:P 185 29 0.0299 0.0649 0.4138 0.56 3cx5:E, 3cxh:P, 3cxh:E, 8e7s:C, 8e7s:c, 8ec0:C, 8ec0:c, 1ezv:E, 6giq:E, 6giq:P, 6hu9:E, 6hu9:P, 2ibz:E, 1kb9:E, 1kyo:E, 1kyo:P, 1p84:E, 4pd4:E, 6t0b:E, 6t0b:P, 6t15:E, 6t15:P, 6ymx:E, 6ymx:P
32 3gce:A 104 84 0.0549 0.2115 0.2619 0.69
33 8q1b:E 182 78 0.0574 0.1264 0.2949 0.76 8q1b:P
34 8ab7:P 186 41 0.0374 0.0806 0.3659 0.86 8ab7:E, 8ab8:P, 8ab9:P, 8aba:P, 8abb:P, 8abe:P, 8abf:P, 8abg:P, 8abh:P, 8abi:P, 8abj:P, 8abk:P, 8abm:P, 8ac3:P, 8ac4:P, 8ac5:P
35 8jng:A 147 37 0.0299 0.0816 0.3243 2.2
36 6g1o:A 486 72 0.0474 0.0391 0.2639 2.6
37 7bvc:A 1078 68 0.0549 0.0204 0.3235 3.6 7bvg:A
38 2wqd:A 570 81 0.0623 0.0439 0.3086 3.9
39 6wn3:B 328 45 0.0374 0.0457 0.3333 7.5 7szh:A, 7szh:B, 7szh:C, 6wn3:A, 6wn3:C, 6wnb:A, 6wnb:B, 6wnb:C
40 6kls:A 134 31 0.0299 0.0896 0.3871 9.7 6kls:D, 6klv:A, 6klv:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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