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BioLiP
>protein
QYLLPEAKAQDSDKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLA
KYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHD
LLPFFEQLSRVDDVYSVLR

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1t9z:A 181 179 0.9832 0.9724 0.9832 1.39e-130 6du2:A, 6du2:B, 6du3:A, 6du3:B, 2ghq:A, 2ghq:B, 2ght:A, 2ght:B, 3l0b:A, 3l0c:A, 3l0c:B, 3l0y:A, 3l0y:B, 3pgl:A, 3pgl:B, 1ta0:A, 4ygy:A, 4ygy:B, 4yh1:A, 4yh1:B
2 2hhl:C 184 172 0.7877 0.7663 0.8198 1.91e-106 2hhl:A, 2hhl:D
3 2q5e:A 181 176 0.7654 0.7569 0.7784 7.39e-104 2q5e:B, 2q5e:C, 2q5e:D, 2q5e:E, 2q5e:F, 2q5e:G, 2q5e:H
4 8ujm:B 237 172 0.4469 0.3376 0.4651 1.04e-41 8ujm:A
5 4qqf:F 191 166 0.3352 0.3141 0.3614 2.93e-27 3qle:A
6 3ef1:A 372 100 0.1285 0.0618 0.2300 1.54e-05 3ef0:A, 4xpz:A, 4xq0:A
7 7dhw:A 726 76 0.1620 0.0399 0.3816 0.94
8 4avn:A 420 76 0.1341 0.0571 0.3158 1.3 4avo:A, 4b4f:A, 4b4f:B
9 3egw:A 1244 53 0.0950 0.0137 0.3208 1.4 3ir5:A, 3ir6:A, 3ir7:A, 1q16:A, 1r27:A, 1r27:C, 1siw:A, 1y4z:A, 1y5i:A, 1y5l:A, 1y5n:A
10 6vw8:C 152 26 0.0615 0.0724 0.4231 1.4 6vw7:A, 6vw7:C, 6vw8:A
11 8beq:A 534 27 0.0615 0.0206 0.4074 3.0 8beq:B, 8bes:A, 8bes:B, 8bes:C, 8bes:D, 8bet:A, 8bet:B, 8bet:C, 8bet:D, 8beu:A, 8beu:B, 8beu:C, 8beu:D
12 8gxv:A 353 86 0.1341 0.0680 0.2791 3.8
13 2y3a:A 976 47 0.0950 0.0174 0.3617 3.9
14 6n55:E 214 59 0.1117 0.0935 0.3390 5.5 6n53:A, 6n53:B, 6n54:A, 6n54:B, 6n55:D, 6n55:F, 6pwz:D, 6pwz:E, 6pwz:H, 7sql:A, 7sql:C, 7sql:B, 7sql:D, 1udw:A, 1udw:B, 1uei:A, 1uei:B, 1uej:A, 1uej:B, 1uj2:A, 1uj2:B, 1xrj:A, 1xrj:B
15 2zu8:A 373 54 0.0894 0.0429 0.2963 6.0 2zu8:B, 2zu9:B, 2zu9:A
16 7bi6:A 829 20 0.0670 0.0145 0.6000 6.3 8a9i:A, 7bi9:A, 7z74:A, 7z75:A
17 6a30:A 527 99 0.1508 0.0512 0.2727 6.9
18 8tj5:T 801 21 0.0615 0.0137 0.5238 7.4 8tj5:R
19 7bi2:A 1021 20 0.0670 0.0118 0.6000 7.5
20 5ue8:A 847 52 0.0894 0.0189 0.3077 7.7 5ue8:B, 1y8f:A
21 4j9v:A 456 22 0.0670 0.0263 0.5455 8.3 4j9u:H, 4j9u:G, 4j9u:E, 4j9u:F, 4j9v:B, 6v4k:E, 6v4k:F, 6v4k:G, 6v4k:H, 6v4l:C, 6v4l:D
22 4a6f:B 110 51 0.0838 0.1364 0.2941 9.6 4a6f:A, 4a6h:A, 4a6h:C, 4a6h:B, 4a6h:D, 4a6k:A, 4a6k:C, 4a6k:B, 4a6k:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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