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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
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KYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHD
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The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1t9z:A 181 180 0.9889 0.9834 0.9889 5.99e-132 6du2:A, 6du2:B, 6du3:A, 6du3:B, 2ghq:A, 2ghq:B, 2ght:A, 2ght:B, 3l0b:A, 3l0c:A, 3l0c:B, 3l0y:A, 3l0y:B, 3pgl:A, 3pgl:B, 1ta0:A, 4ygy:A, 4ygy:B, 4yh1:A, 4yh1:B
2 2hhl:C 184 172 0.7889 0.7717 0.8256 6.20e-107 2hhl:A, 2hhl:D
3 2q5e:A 181 178 0.7722 0.7680 0.7809 2.93e-105 2q5e:B, 2q5e:C, 2q5e:D, 2q5e:E, 2q5e:F, 2q5e:G, 2q5e:H
4 8ujm:B 237 174 0.4500 0.3418 0.4655 2.25e-42 8ujm:A
5 4qqf:F 191 167 0.3333 0.3141 0.3593 4.26e-27 3qle:A
6 3ef1:A 372 100 0.1333 0.0645 0.2400 3.58e-06 3ef0:A, 4xpz:A, 4xq0:A
7 7dhw:A 726 76 0.1611 0.0399 0.3816 1.1
8 4avn:A 420 76 0.1333 0.0571 0.3158 1.3 4avo:A, 4b4f:A, 4b4f:B
9 6vw8:C 152 26 0.0611 0.0724 0.4231 1.4 6vw7:A, 6vw7:C, 6vw8:A
10 3egw:A 1244 53 0.0944 0.0137 0.3208 1.4 3ir5:A, 3ir6:A, 3ir7:A, 1q16:A, 1r27:A, 1r27:C, 1siw:A, 1y4z:A, 1y5i:A, 1y5l:A, 1y5n:A
11 6yjb:A 309 82 0.1222 0.0712 0.2683 2.3 6ykf:A, 6ymg:A, 6ymg:B
12 8beq:A 534 27 0.0611 0.0206 0.4074 3.1 8beq:B, 8bes:A, 8bes:B, 8bes:C, 8bes:D, 8bet:A, 8bet:B, 8bet:C, 8bet:D, 8beu:A, 8beu:B, 8beu:C, 8beu:D
13 2y3a:A 976 47 0.0944 0.0174 0.3617 4.1
14 8gxv:A 353 86 0.1333 0.0680 0.2791 4.1
15 4yrc:A 419 119 0.1778 0.0764 0.2689 4.7 3hrk:A, 3hrk:B, 3lc0:A, 4yp0:A, 4ypf:A, 4yre:A, 4yre:B, 4yrf:A, 4yrg:A, 4yri:A, 4yrj:A, 4yrk:A, 4yrk:B, 4yrl:A, 4yrm:A, 4yrm:B, 4yrn:A, 4yrn:B, 4yro:A, 4yrp:A, 4yrp:B, 4yrq:A, 4yrr:A, 4yrr:B, 4yrs:A, 4yrt:A
16 2zu8:A 373 54 0.0889 0.0429 0.2963 6.3 2zu8:B, 2zu9:B, 2zu9:A
17 6n55:E 214 59 0.1111 0.0935 0.3390 6.7 6n53:A, 6n53:B, 6n54:A, 6n54:B, 6n55:D, 6n55:F, 6pwz:D, 6pwz:E, 6pwz:H, 7sql:A, 7sql:C, 7sql:B, 7sql:D, 1udw:A, 1udw:B, 1uei:A, 1uei:B, 1uej:A, 1uej:B, 1uj2:A, 1uj2:B, 1xrj:A, 1xrj:B
18 7bi6:A 829 20 0.0667 0.0145 0.6000 7.0 8a9i:A, 7bi9:A, 7z74:A, 7z75:A
19 6a30:A 527 99 0.1500 0.0512 0.2727 7.1
20 8tj5:T 801 21 0.0611 0.0137 0.5238 7.4 8tj5:R
21 5ue8:A 847 52 0.0889 0.0189 0.3077 7.7 5ue8:B, 1y8f:A
22 7bi2:A 1021 20 0.0667 0.0118 0.6000 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218