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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLA
KYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSDTELHD
LLPFFEQLSRVDDVYSVLR

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1t9z:A 181 179 0.9832 0.9724 0.9832 3.48e-130 6du2:A, 6du2:B, 6du3:A, 6du3:B, 2ghq:A, 2ghq:B, 2ght:A, 2ght:B, 3l0b:A, 3l0c:A, 3l0c:B, 3l0y:A, 3l0y:B, 3pgl:A, 3pgl:B, 1ta0:A, 4ygy:A, 4ygy:B, 4yh1:A, 4yh1:B
2 2hhl:C 184 172 0.7877 0.7663 0.8198 5.46e-106 2hhl:A, 2hhl:D
3 2q5e:A 181 176 0.7654 0.7569 0.7784 1.88e-103 2q5e:B, 2q5e:C, 2q5e:D, 2q5e:E, 2q5e:F, 2q5e:G, 2q5e:H
4 8ujm:B 237 172 0.4469 0.3376 0.4651 4.16e-41 8ujm:A
5 4qqf:F 191 167 0.3296 0.3089 0.3533 5.06e-26 3qle:A
6 3ef1:A 372 100 0.1341 0.0645 0.2400 3.62e-06 3ef0:A, 4xpz:A, 4xq0:A
7 7dhw:A 726 103 0.1788 0.0441 0.3107 0.74
8 4avn:A 420 76 0.1341 0.0571 0.3158 1.2 4avo:A, 4b4f:A, 4b4f:B
9 6vw8:C 152 26 0.0615 0.0724 0.4231 1.4 6vw7:A, 6vw7:C, 6vw8:A
10 6yjb:A 309 82 0.1229 0.0712 0.2683 2.3 6ykf:A, 6ymg:A, 6ymg:B
11 1oah:B 482 88 0.1229 0.0456 0.2500 2.8 1oah:A
12 8beq:A 534 27 0.0615 0.0206 0.4074 3.0 8beq:B, 8bes:A, 8bes:B, 8bes:C, 8bes:D, 8bet:A, 8bet:B, 8bet:C, 8bet:D, 8beu:A, 8beu:B, 8beu:C, 8beu:D
13 8gxv:A 353 86 0.1341 0.0680 0.2791 3.9
14 2y3a:A 976 47 0.0950 0.0174 0.3617 3.9
15 4yrc:A 419 119 0.1788 0.0764 0.2689 4.5 3hrk:A, 3hrk:B, 3lc0:A, 4yp0:A, 4ypf:A, 4yre:A, 4yre:B, 4yrf:A, 4yrg:A, 4yri:A, 4yrj:A, 4yrk:A, 4yrk:B, 4yrl:A, 4yrm:A, 4yrm:B, 4yrn:A, 4yrn:B, 4yro:A, 4yrp:A, 4yrp:B, 4yrq:A, 4yrr:A, 4yrr:B, 4yrs:A, 4yrt:A
16 6n55:E 214 59 0.1117 0.0935 0.3390 5.4 6n53:A, 6n53:B, 6n54:A, 6n54:B, 6n55:D, 6n55:F, 6pwz:D, 6pwz:E, 6pwz:H, 7sql:A, 7sql:C, 7sql:B, 7sql:D, 1udw:A, 1udw:B, 1uei:A, 1uei:B, 1uej:A, 1uej:B, 1uj2:A, 1uj2:B, 1xrj:A, 1xrj:B
17 7bi6:A 829 20 0.0670 0.0145 0.6000 6.5 8a9i:A, 7bi9:A, 7z74:A, 7z75:A
18 7r8b:B 564 32 0.0838 0.0266 0.4688 6.6
19 6a30:A 527 99 0.1508 0.0512 0.2727 6.8
20 2zu8:A 373 54 0.0894 0.0429 0.2963 6.9 2zu8:B, 2zu9:B, 2zu9:A
21 8tj5:T 801 21 0.0615 0.0137 0.5238 7.0 8tj5:R
22 5ue8:A 847 52 0.0894 0.0189 0.3077 7.3 5ue8:B, 1y8f:A
23 7bi2:A 1021 20 0.0670 0.0118 0.6000 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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