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BioLiP
>protein
QWYVCNREKLCESLQAVFVQSYLDQGTQIFLNNSIEKSGWAAIQAYHSAVSSAFSLAMSRTSINGLLGRGSMFVFSPDQF
QRLLKINPDWKTHRLLDLGAGDGEVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNQYDVISCLNLLDRCDQ
PLTLLKDIRSVLEPTRGRVILALVLPFHPYVENVGGKWEKPSEILEIKGQNWEEQVNSLPEVFRKAGFVIEAFTRLPYLC
EGDMYNDYYVLDDAVFVLKPV

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7yf2:A 275 264 1.0000 0.9491 0.9886 0.0 8gze:B, 8gze:A, 8gzf:A, 8gzf:B, 7y9c:A, 7y9c:B, 7yf2:B, 7yf3:A, 7yf3:B, 7yf4:A, 7yf4:B
2 5thy:A 387 105 0.1111 0.0749 0.2762 0.052 5thy:B, 5thz:B, 5thz:A
3 6dtn:B 233 107 0.1149 0.1288 0.2804 0.077 5cvd:A, 5cvd:B, 5cve:A, 5cve:B, 5e1b:A, 5e1b:B, 5e1d:A, 5e1d:B, 5e1m:A, 5e1m:B, 5e1o:A, 5e1o:B, 5e2a:A, 5e2a:B, 5e2b:A, 5e2b:B, 2ex4:A, 2ex4:B, 7k3d:B, 7k3d:A, 6kdq:A, 6kdq:B, 6pva:B, 6pvb:B, 7ss1:A, 7ss1:B, 7u1m:A, 7u1m:B, 6wh8:B, 6wh8:A, 6wj7:B
4 2glu:A 234 34 0.0460 0.0513 0.3529 0.23 2glu:B
5 4qdk:A 219 70 0.0651 0.0776 0.2429 0.23 4qdj:A, 4qdk:B
6 6uak:A 297 124 0.1111 0.0976 0.2339 0.26
7 6uk5:A 240 86 0.0805 0.0875 0.2442 0.49 6uk5:B
8 7fje:m 246 123 0.0996 0.1057 0.2114 1.2 5c07:D, 5c07:I, 5c08:D, 5c08:I, 5c09:D, 5c09:I, 5c0a:D, 5c0a:I, 5c0b:D, 5c0b:I, 5c0c:I, 5c0c:D, 5hyj:D, 5hyj:I, 6u07:A, 3uts:D, 3uts:I, 3utt:D, 3utt:I, 6vqo:D, 6vqo:H
9 5f8f:B 361 113 0.1111 0.0803 0.2566 1.6 5f8e:A, 5f8e:B, 5f8f:A, 5f8f:C
10 4kdr:A 208 62 0.0651 0.0817 0.2742 2.1 5dpm:A
11 1p91:A 268 151 0.1226 0.1194 0.2119 4.6 1p91:B
12 1xtp:A 246 53 0.0728 0.0772 0.3585 5.3
13 8ih5:A 689 57 0.0766 0.0290 0.3509 6.0 8ih5:F, 8ih5:B, 8ih5:C, 8ih5:D, 8ih5:E
14 3g5t:A 299 50 0.0651 0.0569 0.3400 6.1
15 3w15:A 336 54 0.0536 0.0417 0.2593 6.4
16 6hqv:A 1555 64 0.0575 0.0096 0.2344 6.5 6hqv:B
17 3ftf:A 246 39 0.0421 0.0447 0.2821 6.5 3fte:A, 3r9x:B
18 8k7v:B 755 60 0.0805 0.0278 0.3500 7.9 8k7v:A, 8k7v:C, 8k7v:D
19 3jwh:A 191 69 0.0728 0.0995 0.2754 8.7 3jwh:B
20 7ye1:D 1144 24 0.0383 0.0087 0.4167 8.7 7ye2:D
21 4u1q:A 341 115 0.1034 0.0792 0.2348 8.7 4u1q:B, 4u1q:C, 4u1q:D, 4x3q:A, 4x3q:B, 4x3q:C, 4x3q:D
22 3kv6:D 448 131 0.1111 0.0647 0.2214 9.3 3kv5:D, 3kv5:A, 3kv6:A, 3kv9:A, 3kva:A, 3u78:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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