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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSF
IGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVD
KYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYE
AAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLK
QGKGAGKVEQTASMVGLRHKF

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3a2s:X 341 341 1.0000 1.0000 1.0000 0.0 3vzu:X, 3vzw:X
2 4aui:C 308 340 0.5924 0.6558 0.5941 2.80e-123 4aui:A, 4aui:B
3 8jto:A 343 365 0.2903 0.2886 0.2712 1.72e-06
4 8juq:A 350 112 0.1056 0.1029 0.3214 7.74e-04 7eqm:A, 7eqm:B, 7eqm:C, 7eqr:A, 7eqr:B, 7eqr:C, 7eqr:D, 7eqr:E, 7eqr:F, 8juq:B, 8juq:C, 8juq:G, 8juq:H, 8jur:A, 8jur:B, 5mdo:A, 5mdo:B, 5mdo:C, 5mdo:D, 5mdo:E, 5mdr:A, 5mdr:B, 5mdr:C, 5mdr:D, 5mdr:E, 7x5p:A, 7x5p:B, 7x5p:C, 7x5p:D, 7x5p:E, 7x5p:F, 7x5q:B, 7x5q:A, 7x5q:D
5 1e54:A 332 94 0.0997 0.1024 0.3617 0.001 2fgq:X, 2fgr:A
6 3l0d:A 332 42 0.0528 0.0542 0.4286 0.84 3l0d:B
7 8bmw:M 294 118 0.0909 0.1054 0.2627 2.6
8 1fio:A 190 39 0.0411 0.0737 0.3590 5.8
9 7nac:n 425 28 0.0381 0.0306 0.4643 6.5 7btb:n, 6c0f:n, 6cb1:n, 6elz:n, 6em1:n, 6em3:n, 6em4:n, 6em5:n, 6ft6:n, 3jct:n, 6m62:n, 7ohq:n, 7ohr:n, 7ohs:n, 7ohv:n, 7ohw:n, 7r6q:n, 7r7a:n, 7u0h:n, 7uoo:n, 7uqb:n, 7uqz:n, 7v08:n, 8v83:n, 8v84:n, 8v87:n, 6ylx:n, 6yly:n, 5z3g:M
10 6s32:D 352 74 0.0616 0.0597 0.2838 8.3 6s32:A, 6s32:B, 6s32:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218