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BioLiP
>protein
QVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLF
ECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWF
DDMTDTELLDLIPFFEGLSR

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2hhl:C 184 180 1.0000 0.9783 1.0000 1.14e-132 2hhl:A, 2hhl:D
2 1t9z:A 181 170 0.7778 0.7735 0.8235 8.77e-107 6du2:A, 6du2:B, 6du3:A, 6du3:B, 2ghq:A, 2ghq:B, 2ght:A, 2ght:B, 3l0b:A, 3l0c:A, 3l0c:B, 3l0y:A, 3l0y:B, 3pgl:A, 3pgl:B, 1ta0:A, 4ygy:A, 4ygy:B, 4yh1:A, 4yh1:B
3 2q5e:A 181 167 0.7889 0.7845 0.8503 1.97e-103 2q5e:B, 2q5e:C, 2q5e:D, 2q5e:E, 2q5e:F, 2q5e:G, 2q5e:H
4 8ujm:B 237 179 0.4278 0.3249 0.4302 3.18e-43 8ujm:A
5 4qqf:F 191 155 0.3389 0.3194 0.3935 3.86e-29 3qle:A
6 3ef1:A 372 104 0.1444 0.0699 0.2500 5.26e-05 3ef0:A, 4xpz:A, 4xq0:A
7 3shq:A 299 191 0.2556 0.1538 0.2408 0.039
8 6yjb:A 309 94 0.1333 0.0777 0.2553 0.20 6ykf:A, 6ymg:A, 6ymg:B
9 2y3a:A 976 47 0.0889 0.0164 0.3404 2.9
10 3o8o:E 752 24 0.0611 0.0146 0.4583 4.3 3o8o:A, 3o8o:C, 3o8o:G
11 7dhw:A 726 63 0.1333 0.0331 0.3810 5.9
12 8tj5:T 801 23 0.0556 0.0125 0.4348 9.8 8tj5:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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