Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM
LPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQNFP
EINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLVEQVPTMLQYATHIKSDSLYNTPPTFSIY
MLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLN
GHRSVGGCRASIYNAVPIDACIALRELMIQFKENA

The query sequence (length=355) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4azj:A 360 358 1.0000 0.9861 0.9916 0.0 4azj:B, 4azk:A, 4azk:B, 2bhx:A, 2bhx:B, 2bi1:A, 2bi1:B, 2bi2:A, 2bi2:B, 2bi3:A, 2bi3:B, 2bi5:A, 2bi5:B, 2bi9:A, 2bi9:B, 2bia:A, 2bia:B, 2bie:A, 2bie:B, 2big:A, 2big:B, 1w23:A, 1w23:B
2 1bt4:A 361 357 0.5775 0.5679 0.5742 9.90e-158 2c0r:A, 2c0r:B, 1w3u:A
3 6czy:A 362 355 0.4592 0.4503 0.4592 7.29e-117 6czy:B, 6czy:C, 6czy:D, 6czz:A, 6czz:B, 6czz:C, 6czz:D
4 6xdk:D 359 357 0.4282 0.4234 0.4258 6.03e-112 6xdk:B, 6xdk:A, 6xdk:C
5 8a5v:E 366 362 0.4648 0.4508 0.4558 1.80e-110 8a5v:C, 8a5v:F, 8a5v:B, 8a5v:A, 8a5v:G, 8a5v:H, 8a5w:D, 8a5w:C, 8a5w:E, 8a5w:F, 8a5w:B, 8a5w:A, 8a5w:H, 3e77:A, 3e77:B
6 5yb0:B 349 357 0.4479 0.4556 0.4454 3.07e-103 5yb0:A, 5yb0:C, 5yb0:D, 5yb0:E, 5yb0:F, 5yb0:G, 5yb0:H, 5yb0:I, 5yb0:J, 5yb0:K, 5yd2:A, 5yd2:B
7 3qbo:B 359 357 0.4282 0.4234 0.4258 4.69e-101 3qbo:A
8 1bjo:A 360 358 0.4141 0.4083 0.4106 2.07e-97 1bjo:B
9 7t7j:B 360 358 0.4254 0.4194 0.4218 2.36e-97 7t7j:A
10 3qm2:B 331 358 0.4056 0.4350 0.4022 5.21e-82 3qm2:A
11 3ffr:A 361 316 0.2169 0.2133 0.2437 2.79e-12
12 2fyf:A 368 365 0.2197 0.2120 0.2137 1.36e-09 2fyf:B, 3vom:A, 3vom:B
13 2dr1:A 381 290 0.1831 0.1706 0.2241 1.43e-07 2dr1:B
14 6mfb:D 386 247 0.1577 0.1451 0.2267 1.28e-04 6mfb:A, 6mfb:B, 6mfb:C
15 1iug:A 348 179 0.1352 0.1379 0.2682 0.060 1iug:B
16 2huf:A 385 209 0.1239 0.1143 0.2105 0.62 2huf:B, 2hui:A, 2hui:B, 2huu:A, 2huu:B
17 3kgw:B 388 327 0.1831 0.1675 0.1988 2.8 3kgw:A, 3kgx:A
18 3zok:A 365 23 0.0338 0.0329 0.5217 6.8 3zok:B, 3zok:C, 3zok:D
19 8d2q:A 906 55 0.0394 0.0155 0.2545 7.8
20 3zja:A 114 74 0.0535 0.1667 0.2568 8.5
21 6wbr:A 942 55 0.0394 0.0149 0.2545 8.7 6wc0:A
22 7ykk:E 735 55 0.0479 0.0231 0.3091 9.7 7nku:A, 7nku:F, 7nku:B, 7nku:C, 7nku:D, 7nku:E, 7wbb:A, 7wbb:B, 7wbb:D, 7wbb:E, 7wbb:C, 7wd3:A, 7wd3:B, 7wd3:C, 7wd3:D, 7wd3:E, 7wd3:F, 7ykk:D, 7ykk:F, 7ykk:A, 7ykk:B, 7ykk:C, 7ykl:F, 7ykl:A, 7ykl:B, 7ykl:C, 7ykl:D, 7ykl:E, 7ykt:F, 7ykt:A, 7ykt:B, 7ykt:C, 7ykt:D, 7ykt:E, 7ykz:D, 7ykz:C, 7ykz:F, 7ykz:B, 7ykz:E, 7ykz:A, 7z11:A, 7z11:B, 7z11:C, 7z11:D, 7z11:F, 7z11:E, 7z34:w, 7z34:m, 7z34:n, 7z34:t, 7z34:Aa, 7z34:x
23 8d2o:A 749 55 0.0394 0.0187 0.2545 10.0

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218